Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00195
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     29   2.8  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           29   2.8  
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              27   8.5  

>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 125 LKHQLSTSLGTFFDYNRHGHQKKASSVDASALQSAKLEQS 6
           +K + STSL    +YN H H  +   +  SA +   LE++
Sbjct: 760 IKPEASTSLCNMLEYNLHKHLDRLEEISGSASKEFGLEKA 799


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 91   KVPSEVES*CFSQSPSSINRAARDQAPAPGCENASPSQRNL*VSFLKLFY 240
            K+ +EV     S SPSS + +A ++  + G    SPS+ N+   F K  +
Sbjct: 1280 KLITEVHKKSSSSSPSSASSSAAERHKSFGSHGRSPSEENVEEEFRKALF 1329


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 65  DVRADYNRKRSQAKLKVDVLVSRQVRLIVRPAIRRRHPDAKTHRP 199
           D ++D +  +S  K K DV+V+R   +   P      PD   HRP
Sbjct: 124 DDQSDQSYTKSSKKKKKDVVVNRPPIIYHPPPEIYHRPDIVVHRP 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,366
Number of Sequences: 59808
Number of extensions: 312930
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)