Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00195
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   1.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.9  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -1

Query: 509 RQKKTSKSNKMARYYSEHAFLTSWTDYRNDASLAHTKKKLEHKTRNY 369
           ++++ SK  K+    S +   +++ +Y N+    +  KKL++   NY
Sbjct: 71  KERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -1

Query: 509 RQKKTSKSNKMARYYSEHAFLTSWTDYRNDASLAHTKKKLEHKTRNY 369
           ++++ SK  K+    S +   +++ +Y N+    +  KKL++   NY
Sbjct: 71  KERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -1

Query: 509 RQKKTSKSNKMARYYSEHAFLTSWTDYRNDASLAHTKKKLEHKTRNY 369
           ++++ SK  K+    S +   +++ +Y N+    +  KKL++   NY
Sbjct: 71  KERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -1

Query: 509 RQKKTSKSNKMARYYSEHAFLTSWTDYRNDASLAHTKKKLEHKTRNY 369
           ++++ SK  K+    S +   +++ +Y N+    +  KKL++   NY
Sbjct: 71  KERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 135 WRLTKTSTFNFAWDLFRL 82
           W +   S+F F WDL  L
Sbjct: 79  WVIHPCSSFRFYWDLCML 96


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 135 WRLTKTSTFNFAWDLFRL 82
           W +   S+F F WDL  L
Sbjct: 79  WVIHPCSSFRFYWDLCML 96


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 135 WRLTKTSTFNFAWDLFRL 82
           W +   S+F F WDL  L
Sbjct: 79  WVIHPCSSFRFYWDLCML 96


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 359 YLPCNFAFYVRVFFLCVLSLRHSDSQST 442
           +LP     YV     CV++ RH + ++T
Sbjct: 208 FLPMLVMLYVYGRISCVIASRHRNLEAT 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,717
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)