Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00194
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.2  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.2  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    26   6.7  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   8.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.9  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 671 NINNVVMYKFSNKIFIEMQNHLLYSNVINNTFKIITFH 558
           +I N+++Y    K+F+     ++   + NNT K+I+ H
Sbjct: 188 SITNLILYS-PKKLFVSTTTQVMVYKIKNNTKKVISNH 224


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 695 NEFCKP--LTNINNVVMYKFSNKIFIEMQNHLLYSNVINNTFKIITFHVQ*FPINVLEL 525
           N  C+   +T +NN  +YK  N +FI +Q   L    + N   I+ F+    P    E+
Sbjct: 83  NSACRASKITALNNRELYKDDNGLFITVQTSFLDGIRLGNGVDILIFNPPYVPTEFEEI 141


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 585 IYYI---RVQQVILHFYENFVTKFVHDHIIDICQRLTEF 692
           +YYI    V ++ +   ++FVT+F  D  ID+   LTE+
Sbjct: 277 VYYIGSRAVTEISIEGLKSFVTEFFPDSDIDMDALLTEY 315


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 485 IILFRKSSHGTF 450
           I+LFRKS HGT+
Sbjct: 580 IVLFRKSGHGTY 591


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 719 LKLTNFSYNEFCKPLTNINNVVMYKFSNKIFIEMQ-NHLLYSNVINNTFKI 570
           LKL + S   F + +++I  +  + F+N   +E Q +H+LYS  + NT+ I
Sbjct: 646 LKLYHLSILYFFELISSIFWIAHHVFANDALLEKQYHHVLYS--LANTYVI 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,572
Number of Sequences: 5004
Number of extensions: 53469
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)