Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00194
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0544 + 24811913-24812637,24837501-24837589,24837779-24837819     28   9.3  
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314...    28   9.3  

>11_06_0544 + 24811913-24812637,24837501-24837589,24837779-24837819
          Length = 284

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -1

Query: 330 NKAETVESSRNNIKPSGPTPYL*QKPAN------FILTQQLRVSPQDMQANSHTRWTRDK 169
           NK     + RN++  S PTP +    A        +LT+Q   SPQ +    + +W + K
Sbjct: 136 NKFPAYRTLRNDLSTSQPTPPMPPSSAQPTITLPLVLTRQTGGSPQLITEEQYAQWAKGK 195


>06_01_0446 -
           3147007-3147111,3147215-3147367,3147445-3147497,
           3147670-3147988,3148754-3148892,3149141-3149222,
           3149711-3149789,3150135-3150314,3150811-3151070,
           3151192-3151294,3151469-3151609,3151797-3151870,
           3153536-3153635,3154108-3154167,3154381-3154428,
           3154519-3154610,3155023-3155071,3155810-3155879,
           3156408-3156505,3157288-3157347
          Length = 754

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 689 FCKPLTNINNVVMYKFSNKIFIEMQNHLLYSNVINN 582
           F KP+ +  N  +++ + + F   +NHL Y   INN
Sbjct: 388 FGKPVKDSANTSIFQHAGRAFAATENHLPYEIDINN 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,736
Number of Sequences: 37544
Number of extensions: 322479
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)