Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00194
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)                       31   1.0  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     29   4.1  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.2  
SB_1309| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_51186| Best HMM Match : Cornifin (HMM E-Value=0.00014)              28   7.2  

>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
          Length = 869

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -1

Query: 522 LLTIQLLKEPNLNYSISKKLSWNVPIEINKIFTFKAKLSSMR 397
           LLTI LL   NL  SI++ LS N+ + IN++ +    LS  R
Sbjct: 515 LLTINLLLSINLLLSINRLLSINLLLSINRLLSINRLLSINR 556


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  NHQTTSPDVCSPTRSPESECARSKCTYHVSTVCDC 197
           NH T +P     +R+  S C+R    + V+ V DC
Sbjct: 316 NHDTEAPSEDGTSRNNNSTCSRMATEFAVNEVVDC 350


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 111  PDVCSPTR--SPES-ECARSKCTYHVSTVCDCLPACPA 215
            PD C P R   P + +CA ++    V  VCD +P+CPA
Sbjct: 2958 PDSC-PVRVCKPGTYQCADNRKCISVLEVCDGIPSCPA 2994


>SB_1309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 164 MHLSRVHRV*LFACMSCGLTRSCCVRMKF 250
           +H+SR   V L  C S   TR+CCV M F
Sbjct: 42  LHMSRQGTVALL-CPSYATTRNCCVTMSF 69


>SB_51186| Best HMM Match : Cornifin (HMM E-Value=0.00014)
          Length = 217

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 674 TNINNVVMYKFSNKIFIEMQNHLLYSNVINNTFKIITFHV 555
           TN+ N +     N ++  M NH +Y+N+ N+ +  +  H+
Sbjct: 161 TNMPNHMYTNMPNHMYTNMPNHNMYTNMPNHMYTNMPNHI 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,881,449
Number of Sequences: 59808
Number of extensions: 392047
Number of successful extensions: 1051
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)