Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00194
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    30   1.5  
At3g52640.2 68416.m05800 nicastrin-related contains weak similar...    30   1.5  
At3g02170.1 68416.m00190 expressed protein                             30   1.5  
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i...    29   4.5  
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i...    29   4.5  
At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote...    28   5.9  

>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 707 NFSYNEFCKPLTN-INNVVMYKFSNKIFIEMQNHLLYSNVINNTFKIITFHVQ*FPI 540
           N  Y+E C+  +  + ++   +    IF++ +N  L + V+N  FKI T H++ + I
Sbjct: 480 NNRYDEPCEQGSGKVKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHLENYRI 536


>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 705

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 609 VILHFYENFVTKFVHDHIIDICQR 680
           V+  F  NFV KF H H+ D+C++
Sbjct: 420 VLEDFDTNFVNKFYHSHLDDLCKK 443


>At3g02170.1 68416.m00190 expressed protein
          Length = 905

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 301 QQHQAFGADTVSLTKTGEFHSHTAAPRQSAGHAGKQSHTVDT 176
           +  QA  AD  S+TK+G    H+ +PR      G +  T  T
Sbjct: 489 RSRQALAADAGSMTKSGRSQQHSVSPRTQPKKLGFEKQTRPT 530


>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 111 PDVCSPTRSPESECARSKCTYHVSTVCDCL 200
           PD C P   P+S C  ++CT   + VC C+
Sbjct: 542 PDWCRPV-PPKSCCCTTRCTEAEARVCACV 570


>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 111 PDVCSPTRSPESECARSKCTYHVSTVCDCL 200
           PD C P   P+S C  ++CT   + VC C+
Sbjct: 542 PDWCRPV-PPKSCCCTTRCTEAEARVCACV 570


>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 716

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 342 ITKCNKAETVESSRNNIKPSGPTP 271
           I +CN+ +T++ SRNN+  SGP P
Sbjct: 156 ILQCNRLKTLDVSRNNL--SGPLP 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,858
Number of Sequences: 28952
Number of extensions: 270678
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)