Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00193
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 533 LAPCSNPHRKSTPTIRELRTL 595
           L PC++P+RK       LR L
Sbjct: 130 LTPCASPNRKPDDNQDHLRRL 150


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 153 HKEALLHNAPPDMVGIPGRNTS*LMAASRSKLRPPL 260
           H    L   PP  +GIP        A S    RPP+
Sbjct: 129 HNGDPLSQPPPAHMGIPPYQLDSKTAGSMGLTRPPM 164


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 153 HKEALLHNAPPDMVGIPGRNTS*LMAASRSKLRPPL 260
           H    L   PP  +GIP        A S    RPP+
Sbjct: 21  HNGDPLSQPPPAHMGIPPYQLDSKTAGSMGLTRPPM 56


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 289 DFICEQTRCYYYNY 330
           DF+C  T  Y+ NY
Sbjct: 145 DFLCRHTVEYFQNY 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,178
Number of Sequences: 336
Number of extensions: 3421
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)