Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00193
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   2.0  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    27   3.5  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   6.2  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   6.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   8.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.2  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   8.2  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 126 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 1
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 608 NDQDQKEEPTQGPYEDDEGIVGDD 679
           +D+D++E+P  G  EDD+ +V  D
Sbjct: 200 SDKDEEEKPWSGDEEDDDELVVKD 223


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 511 LQSAHLKTSALFKSPPQIDSHYSRAADAHSRDQRPGP 621
           L+SA L  S L KS    +SH   AA + S+   P P
Sbjct: 124 LESAQLGDSGLLKSTILSNSHIDIAALSSSKTSEPTP 160


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 494 PSSLDASSLHTSRLAPCSNPHRKSTPTIRELRTLIPAINDQDQKEEPTQGPYEDDEGIV 670
           P+S  ASS +   L     P + STP + E +  +P I D      P     E ++G++
Sbjct: 82  PNSDIASSNNEPALTVTGAPKQVSTPDVSEKKPSMPVIQD------PIDDSLEKEDGLI 134


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  RLPIDAPAQHADDSMDPLDVPQGSTAPQRT 181
           RLP D P    DD++  L     S APQ T
Sbjct: 253 RLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 140 PLDVPQGSTAPQRTARHGRYSRTEHVMTNG 229
           P D PQGS+ P  T     +S   H  T+G
Sbjct: 18  PYDPPQGSSRPFFTVLKRAFSSVLHPFTSG 47


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 154 WYV*RVHAVISMLGRSIDGQS 92
           WYV R HA IS+  +S DG +
Sbjct: 55  WYVNRRHAPISVYFKSTDGHT 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,279
Number of Sequences: 5004
Number of extensions: 53573
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)