Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00193
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 32 0.40
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 32 0.40
02_03_0360 + 18104948-18106159 31 0.91
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 29 2.8
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 3.7
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 29 3.7
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 4.9
08_01_0541 + 4702930-4703328,4703411-4703506,4703601-4703649,470... 29 4.9
06_03_0143 + 17215975-17216745 29 4.9
06_03_0523 - 21734045-21734301,21734452-21734578 28 6.4
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258 28 8.5
05_03_0454 - 14227447-14228040 28 8.5
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 32.3 bits (70), Expect = 0.40
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = -2
Query: 603 AGMSVRSSRIVGVDLRWGFEQGASLEVCRLEASREEGRSLPMRLLRLKWVGRCSERGGGG 424
+G S+ S+ +G+ R E G S E E +L + LLR +G +E GGGG
Sbjct: 48 SGSSLGSTGSLGIQERREEEGGESEE----EEEEWSFLALLLALLRKSLLGCSAEDGGGG 103
Query: 423 EDDVIGW 403
E IGW
Sbjct: 104 EGMEIGW 110
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 554 HRKSTPTIRELRTLIPAINDQDQKEEPTQGPYEDDEGIVGDDP 682
+R S P EL P I +QDQ+ + Q P EG++ DDP
Sbjct: 281 YRTSQPVAPEL----PRIPEQDQQRDSLQKPVTTLEGLIADDP 319
>02_03_0360 + 18104948-18106159
Length = 403
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 539 PCSNPHRKSTPTIRELRTLIPAINDQDQKEEPTQGPYEDDEGIVGD 676
P ++ HR+ P + ++++ A+N E+ G EDD G G+
Sbjct: 250 PDADDHRRRRPDGHQFQSILVAVNKNGDHEDDNDGDEEDDGGGRGE 295
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 114 PSMLMTAWTL*TYHKEALLHNAPPDMVGIPGRNTS*LMAASRSKLRPPLGAST 272
P M+ W+L H++ + N VG+ TS + S S +R L ST
Sbjct: 826 PEMVSKTWSLPNLHEQKIAQNKNGKWVGVSSSTTSEDLEESSSSIRRELLRST 878
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 475 SHRQAATFFP*RLQSAHLKTSALFKSPPQIDSHYSRAADAHSRDQRPGPEGRTH 636
SH F L + S FK+PP+++ +A H R R GR H
Sbjct: 515 SHSMKDIFDVHNLNLKDVAASFCFKNPPKVNIDLESSASKHRRKMRKVDGGRRH 568
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 159 EALLHNAPPDMVGIPGRNTS*LMAASRSKLRPPLGAST 272
E HN P GR+T+ L+AA+ S L P A+T
Sbjct: 871 ECACHNVPRKKPSTSGRHTAALLAATTSSLHVPPPAAT 908
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 107 APAQHADDSMDPLDVPQGSTAPQRTARH 190
AP++HA S P P ++AP + RH
Sbjct: 79 APSRHATPSSSPPSTPSSASAPPPSGRH 106
>08_01_0541 +
4702930-4703328,4703411-4703506,4703601-4703649,
4703771-4703865
Length = 212
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 62 PFNATFNYMRRLPIDAPAQHADDSMDPLDVPQGSTAPQRTARHGRYSRTEHVMTNGCIAL 241
P +A+ + + L I A A H D LD G +A A H R S+ + T C+ L
Sbjct: 84 PASASVSTVADLRILA-ASHLDSLKRRLDALHGDSARDLEASHSRISKRFKMQTQSCLQL 142
>06_03_0143 + 17215975-17216745
Length = 256
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 197 TDHVGRCVVEQCFLVVRLEGPCCHQHAGQEHRWAVSACS 81
T C V C+ VRL P C AG+ R ACS
Sbjct: 196 TTAAAACDVPFCYCRVRLRRPACAAPAGRAARRLEKACS 234
>06_03_0523 - 21734045-21734301,21734452-21734578
Length = 127
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 95 LPIDAPAQHADDSMDPLDVPQGSTAPQRTARHGRYSRT 208
LP AP Q A M+PL + + AP R RH R+ T
Sbjct: 75 LPTGAPPQPAQ--MEPLGARRRTRAPPRRLRHRRHPLT 110
>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
Length = 522
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 163 HCSTTHRPTWSVFQDGTRHD*WLHRAQSSDL 255
H +T+H TW++F GT H W HR + L
Sbjct: 327 HDTTSHLLTWAMFLLGT-HPEWQHRLREEVL 356
>05_03_0454 - 14227447-14228040
Length = 197
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 403 PPNHVVLATATALRAPADPLQP*QSHRQAA 492
PP+ V+ A+A A R PA +QP RQAA
Sbjct: 6 PPSSVLTASAAAARPPASVVQP---QRQAA 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,571,052
Number of Sequences: 37544
Number of extensions: 456859
Number of successful extensions: 1549
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -