Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00193
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40174| Best HMM Match : Copine (HMM E-Value=5.5e-20)                30   1.6  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   3.8  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             28   8.7  
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)             28   8.7  
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_40174| Best HMM Match : Copine (HMM E-Value=5.5e-20)
          Length = 723

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 563 ICGGDLNKALVLRCADWRRQGK 498
           +C GD+++++ + C DW R G+
Sbjct: 132 LCNGDIDRSIRIECYDWDRDGR 153


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 119 HADDS-MDPLDVPQGSTAPQRTARHGRYSRTEHVMTNG 229
           H+D S ++  +   G+TA     RHG +   EH++ NG
Sbjct: 446 HSDKSFVNSREHSSGNTALHMACRHGHFDIVEHLLENG 483


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -2

Query: 222 VMTCSVLEYRPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 91
           V  C  +    CR V+C  V+ C  S+   L    SS  WA  + GSL
Sbjct: 361 VCACRYVRSVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 473 NLIGKLRPSSLD-ASSLHTSRLAPCSNPHRKSTPTIRELRTLI 598
           N I K R SS+D   S+H+ R  P SN    +     E RTLI
Sbjct: 322 NSINKRRSSSMDEVHSVHSGRGTPDSNTSTSTALNTPENRTLI 364


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 491 RPSSLDASSLHTSRLAPCSNPHRKSTPTIRELRTLIPAINDQDQKEEPTQGP 646
           RP       + T+  AP SNP+  +TPT        P +N Q Q    T  P
Sbjct: 758 RPGLNPQGQVTTATTAPSSNPNESTTPTTGGR----PGLNPQGQVTTATTAP 805


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 560 KSTPTIRELRTLIPAINDQDQKEEPTQGPYEDDEGIVGDDPAA 688
           + TPT  +          Q+ KEEPT+ P +++E IVGD   A
Sbjct: 498 EETPTPAQPSESQETEEQQECKEEPTEEPQKEEE-IVGDPEMA 539


>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
          Length = 241

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 608 NDQDQKEEPTQGPYEDDEGIVGDDPAAYLTNEAN 709
           +D+D +E+   G  EDDE   GD  A    +EA+
Sbjct: 112 DDEDDEEDSDDGDDEDDEKESGDGDAGNAKDEAS 145


>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -2

Query: 210  SVLEYRPCRAVRCGAVLPCGTSRGSMLSS---ACWAGASMGSLRM*LKVALNGR--PVLI 46
            ++ E+RPC   RC +   C  +  S  SS   +C  G  + + R+  + +L+G   P L+
Sbjct: 993  NLYEHRPCARQRCSSTKKCEVTPWSAWSSCRGSCGVGRKVRTRRIIRQSSLSGMTCPSLV 1052

Query: 45   HK 40
             K
Sbjct: 1053 KK 1054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,605,112
Number of Sequences: 59808
Number of extensions: 502170
Number of successful extensions: 1569
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)