Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00193
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    28   7.1  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    28   7.1  
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /...    28   7.1  
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    28   7.1  

>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 SSLDASSLHTSRLAPCSNPHRKSTPTIRELRTLIPAINDQD 619
           S L A  +HT    P ++P     PT++ELRT I  +  QD
Sbjct: 633 SDLVAVLMHTGYCRPTASP---PPPTMQELRTTIRVLPSQD 670


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 SSLDASSLHTSRLAPCSNPHRKSTPTIRELRTLIPAINDQD 619
           S L A  +HT    P ++P     PT++ELRT I  +  QD
Sbjct: 633 SDLVAVLMHTGYCRPTASP---PPPTMQELRTTIRVLPSQD 670


>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains Pfam profile PF00295: Polygalacturonase
           (pectinase)
          Length = 486

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
 Frame = +1

Query: 283 IKDFICEQTRCYYYNYGSIPVSSAQG*CQKAAIAXXXXXRPPNHV--VLATATALRAPAD 456
           I  F+  + +C YY    +PV   Q              +PP HV  ++ T      P  
Sbjct: 347 ISHFVSMKIKCDYYEEPLVPVEPPQQVEPPTPTKPLAPAKPPRHVGPLMPTKPPTMFP-K 405

Query: 457 PLQP*QSHRQAATFFP*RLQSAHLKTSALFKSPPQID 567
           PL P +S R      P +  +   K  A  K P  ++
Sbjct: 406 PLAPAKSPRHVELPMPTKPPTMFPKPLAPAKPPRHVE 442


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 264 LPVEVGALSAMQPLVMTCSVLEYRPCRAVRCGAVLPCGTSRGSM 133
           LPVE+G  S++  LV++     Y    +VR  A LP G    SM
Sbjct: 160 LPVELGNCSSLSVLVLSNLYNVYEDINSVRGEADLPPGADLTSM 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,195
Number of Sequences: 28952
Number of extensions: 319434
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)