Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00192
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.6  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   8.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.4  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 99   RYIGSPLALNPKTVRTRCF-FFLPKLIALRGY 191
            RY+   LALN +T R RC  F++P +I L  +
Sbjct: 3382 RYLNDALALNCET-RRRCLKFYIPAVIPLSSH 3412


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 45  IRAGGTDQRETFCHDLADRYI 107
           ++ G   QRET C +LA  Y+
Sbjct: 183 VKFGSKQQRETICAELAGSYV 203


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  CTKIIRAGGTDQRETFCHDLADRYIGSPLAL 125
           C   I+    DQ +TF H++++++ G  L L
Sbjct: 517 CRDFIKYIEEDQADTFFHEMSEKFKGCKLIL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,471
Number of Sequences: 5004
Number of extensions: 49800
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)