Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00192
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664     29   2.9  
03_06_0294 + 32893050-32893340,32894540-32895322                       29   3.8  
07_01_0218 - 1623373-1625418                                           29   5.0  
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    28   6.6  

>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
          Length = 332

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 487 PRPCRLNFTSTTMGITIK-IKSVTVSFRFASL--HHCSDE 377
           P PC L FT+TT  + I+ I +  +  R  ++   HC+DE
Sbjct: 137 PPPCALGFTATTTSLMIRNIPNKFLKARLMAILDQHCADE 176


>03_06_0294 + 32893050-32893340,32894540-32895322
          Length = 357

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 572 YSINNFKKLRKSVRKFRRHRKP*KSHPQPETLPSEFHINHHGYHNQ 435
           ++   F + +K + K  + RKP  S P  ++L S   + H GY  +
Sbjct: 109 FANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGE 154


>07_01_0218 - 1623373-1625418
          Length = 681

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 523 DDTENLKNHIHNPRPCRLNFTSTTMGITIKIKSVTVSFRF 404
           D    LK H  +P P RL    +T   T  ++S +V+F F
Sbjct: 61  DGAAYLKGHAFHPSPVRLRRDVSTSTTTTTVRSFSVTFVF 100


>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 553 KNCAKAFVNFDDTENLKNHIHNPRP 479
           +NC  +  N DD EN KN I+NP P
Sbjct: 587 ENCVVSASNTDD-ENSKNGIYNPEP 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,126,124
Number of Sequences: 37544
Number of extensions: 311022
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)