Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00192
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 29 2.9
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 29 2.9
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_8891| Best HMM Match : Zot (HMM E-Value=2.5) 29 5.1
SB_49930| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21) 28 6.8
SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21) 28 6.8
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13) 28 6.8
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 969
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 497 HPQPETLPSEFHINHHGYHNQNQVSDGQ 414
HP + + EFHI G H ++ VS G+
Sbjct: 905 HPDFQKICDEFHIQARGIHGEHSVSTGE 932
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 500 SHPQPETLPSEFHINHHGYHNQNQVSDG 417
+HP + + EFHI G H ++ VS G
Sbjct: 120 AHPDFQKICDEFHIQARGIHGEHSVSTG 147
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 500 SHPQPETLPSEFHINHHGYHNQNQVSDG 417
+HP + + EFHI G H ++ VS G
Sbjct: 552 AHPDFQKICDEFHIQARGIHGEHSVSTG 579
>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 725
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 497 HPQPETLPSEFHINHHGYHNQNQVSDGQ 414
HP + + EFHI G H ++ VS G+
Sbjct: 660 HPDFQKICDEFHIQARGIHGEHSVSTGE 687
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 503 KSHPQPETLPSEFHINHHGYHNQNQVSDGQ 414
K HP+ + + +FHI G H ++ S G+
Sbjct: 279 KDHPEFDKICEKFHIQARGIHGEHSESTGE 308
>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 517 TENLKNHIHNPRPCRLNFTSTTMGITIK-IKSVTVSFRFASLHHCSDEG 374
T++ K+ + NP P ++ ITIK T+ F+ A+ + D+G
Sbjct: 295 TKSSKSFLSNPNPAQIELGDQAANITIKDDDQATIGFKSAAYNVTEDQG 343
>SB_8891| Best HMM Match : Zot (HMM E-Value=2.5)
Length = 392
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 554 KKLRKSVRKFRRHRKP*KSHPQPETLPSEFHINHHGYHNQNQVSDGQF*VCQPS 393
+++RK +++ R+P P +TLP E I+ H Y N + + + PS
Sbjct: 301 EEVRKYEKRYGTARQPDYISPGRQTLPIESVIDLHNYLVSNYIITNELRISSPS 354
>SB_49930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 354 HRHSPLSFSTDPLSGFRFRDPMVDSAKHYSC*GCVSNVVKFEP 226
+RH +S + D L+ F D V+ + HY C C +K P
Sbjct: 9 YRHKSISLAEDALALENFEDDAVNRSLHYVC--CCGKPLKRAP 49
>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
Length = 752
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 42 IIRAGGTDQRETFCH-----DLADRYIGSPLALNPKTVRTRCFFFLPKLIALRGYFS 197
I GGT++ CH DL DR L LNPK ++ + + +LI + Y S
Sbjct: 413 IYGTGGTEEEAMACHDAALKDLLDRCREHNLKLNPKKLKIQVGQGVQRLIGVVTYLS 469
>SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 887
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 42 IIRAGGTDQRETFCH-----DLADRYIGSPLALNPKTVRTRCFFFLPKLIALRGYFS 197
I GGT++ CH DL DR L LNPK ++ + + +LI + Y S
Sbjct: 350 IYGTGGTEEEAMACHDAALKDLLDRCREHNLKLNPKKLKIQVGQGVQRLIGVVTYLS 406
>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
Length = 899
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 514 ENLKNHIHNPRPCRLNFTSTT--MGITIKIKSVTVSFRFASLHHCSDEGLDE*INPQTQP 341
+NL+N N CRLN T I+I + V +S C +E +DE + + P
Sbjct: 334 QNLQNERRNANNCRLNRAKQTAPQDISITVSDVKMSNEERE-SPCEEEAMDELSSCRLMP 392
Query: 340 TEF 332
+ +
Sbjct: 393 SSY 395
>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 122 SQRRTDIAVC*VMTKRFSLICASSPNDLSTL*LATA 15
S++ I C ++ +R + IC+ +PND S + +ATA
Sbjct: 95 SEKLNPIGEC-ILLRRHTAICSLAPNDGSPIAMATA 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,948,721
Number of Sequences: 59808
Number of extensions: 376718
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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