Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00192
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    31   1.0  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   2.4  
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ...    28   5.6  
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    28   7.3  
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    28   7.3  

>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 524 RRHRKP*KSHPQPETLPSEFHINHHGYHNQNQVSDGQ 414
           R  R P KSH     L S+ H +HH +H+ +   D +
Sbjct: 92  RASRSPKKSHKHHNPLSSKRHHHHHNHHHYHLFDDDE 128


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 497 HPQPETLPSEFHINHHGYHNQNQVSDGQF*VCQPSSLQR 381
           HP P     + H +HH +H Q Q     +   QP S QR
Sbjct: 148 HPHPHHQQQQQHNHHHHHHQQQQQHQQMY--FQPQSSQR 184


>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 396

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -1

Query: 494 PQPETLPSEFHINH----HGYHNQNQV 426
           PQP+   SE++ +H    HGY NQ QV
Sbjct: 322 PQPQFYHSEYYYHHAYYNHGYTNQGQV 348


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 491 QPETLPSEFHINHHGYHNQNQVSDG 417
           +PE    +  I++H  HNQNQ  DG
Sbjct: 625 RPEPFAEQGRIHNHESHNQNQFIDG 649


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 491 QPETLPSEFHINHHGYHNQNQVSDG 417
           +PE    +  I++H  HNQNQ  DG
Sbjct: 638 RPEPFAEQGRIHNHESHNQNQFIDG 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,458
Number of Sequences: 28952
Number of extensions: 256150
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)