Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00191
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.64 
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.5  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   7.9  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 327 IC*KPHSKSMVAKILIHGSFKNIQI-EAEKVRESFRLILW 211
           +C  P  K MVAK L+  +F+   + E  ++++ ++ +LW
Sbjct: 4   VCAAPAPKKMVAKSLVLNTFRKASVKEVVELKKPWKKVLW 43


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 662 LVGILMNITSNYFFGVFTSWFEGNHVILKYLPTFVATC-TSFKVPNII 522
           L+GIL++ +  + FG F      +H  +K  P F        K P ++
Sbjct: 12  LLGILLSFSCKFVFGYFNVNQLFDHEFIKVFPNFKGNVEAKIKYPTVV 59


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 541 KLVQVATKVGKYFKIT*LPSNHEVNTPKK*FDVIFISMPTKFLNKLKSKI 690
           K+V+ A K   YF  T +PS   V++  K  DVI   +    L +L + I
Sbjct: 355 KVVKNALKDFNYFSATDVPSAEHVDSVLKDVDVIMSKLGEGELGQLAADI 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,130
Number of Sequences: 5004
Number of extensions: 51221
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)