Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00191
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029     29   2.7  
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434...    29   4.7  
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686...    28   6.2  

>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
          Length = 677

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 518 QITNDQTMTSSTYKNSECYNNTPKY 444
           +++N  T+ + TY+ S+CY  T +Y
Sbjct: 639 RVSNSNTLKNQTYEGSKCYEGTRQY 663


>08_01_0500 +
           4338111-4338195,4339910-4340042,4340116-4340187,
           4340524-4340587,4341383-4341459,4341586-4341657,
           4341741-4341853,4341995-4342126,4342204-4342545,
           4342628-4343022,4343293-4343603,4343967-4344066
          Length = 631

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 689 ILLFNLFKNLVGILMNITSNYFFGVFTSWFEGNHVILKYLPTFVATCTSFKV 534
           +LL  L      +L N+  +    + T+  + N+V+  + PT V  CT F V
Sbjct: 11  VLLLRLLVPAARVLANMEGDALHSLRTNLVDPNNVLQSWDPTLVNPCTWFHV 62


>04_01_0522 -
           6865049-6865131,6865214-6865388,6865692-6865877,
           6866489-6866599,6866678-6866890,6867446-6867553,
           6867632-6867773,6867855-6868951,6871287-6871559
          Length = 795

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 189 RDFIVKSTIGSGETIHGLFRLQFGYF*KIRVLK 287
           R+ +++  + SG+T  GL + QFG +   R+L+
Sbjct: 695 REGLIREIVSSGQTFQGLMKDQFGNYVVQRILQ 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,067
Number of Sequences: 37544
Number of extensions: 273012
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)