Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00191
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22612| Best HMM Match : PE (HMM E-Value=2.8)                        50   1e-06
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             28   8.4  

>SB_22612| Best HMM Match : PE (HMM E-Value=2.8)
          Length = 113

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +1

Query: 97  KLSGPEVGAVRQLITGYRESAAFLLRSADELETLL 201
           +LS  E+ A+R LI GYRESAAFL RSADELE LL
Sbjct: 76  QLSPSEIQAIRHLIQGYRESAAFLYRSADELEQLL 110


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 674 LFKNLVGILMNITSNYFFGVFTSWFEG 594
           L+  L   L    S++F+GV +SWF G
Sbjct: 518 LYSELSSSLSGELSSWFYGVLSSWFSG 544


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 629 YFFGVFTSWFEGNHVILKYLPTFVATCTSFKVPNI 525
           Y+ G+F   FE N+V L++L T +     F+V  +
Sbjct: 265 YYIGIFEKIFESNNVQLEFLITALRIFRIFRVTKL 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,333
Number of Sequences: 59808
Number of extensions: 337945
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)