Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00191
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-8|AAZ32809.1|  219|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF026204-1|AAB71252.1|  152|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>U27312-8|AAZ32809.1|  219|Caenorhabditis elegans Hypothetical
           protein F26A1.15 protein.
          Length = 219

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 392 FKFPTINFIKYQWLKFNYYRFRSAENHTRSLW 297
           FK     F++ + LK+ +  F   ENHTR +W
Sbjct: 93  FKRIRAQFVQRKVLKYEFELFTKFENHTRHVW 124


>AF026204-1|AAB71252.1|  152|Caenorhabditis elegans Hypothetical
           protein C30E1.7 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 346 NLSHWYLIKFIVGNLKML*FLYFSCTGML 432
           N+S  +L +F +GNLK   FL+F   G +
Sbjct: 4   NISSLFLTQFSIGNLKHFSFLFFQVFGSI 32


>Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical
           protein C41G6.11 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 686 LLFNLFKNLVGILMNITSNYFFGVFTSWFEGNHVILKYLPTFVATC 549
           L+  LF   +G L  I + Y +G+ + W+  +  +L  +  F  +C
Sbjct: 80  LIMTLFMQPIG-LFPICAGYSYGILSRWYSWSSHLLMMMVAFFLSC 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,141,683
Number of Sequences: 27780
Number of extensions: 277679
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)