Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00191
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    27   0.23 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    27   0.23 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    27   0.23 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    27   0.23 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.5  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTS-STYKNSECYNNTPKYISHYNI 426
           K P II  ++N+   ++ + Y N+   NN  K + +YNI
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTS-STYKNSECYNNTPKYISHYNI 426
           K P II  ++N+   ++ + Y N+   NN  K + +YNI
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTS-STYKNSECYNNTPKYISHYNI 426
           K P II  ++N+   ++ + Y N+   NN  K + +YNI
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTS-STYKNSECYNNTPKYISHYNI 426
           K P II  ++N+   ++ + Y N+   NN  K + +YNI
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTSSTYKNSECYNNTPKYISHY--NIPV 420
           K   II  ++N+     S Y N+  YN    Y  +Y   IPV
Sbjct: 77  KERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPV 118


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTSSTYKNSECYNNTPKYISHY--NIPV 420
           K   II  ++N+     S Y N+  YN    Y  +Y   IPV
Sbjct: 315 KERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPV 356


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 539 KVPNII*QITNDQTMTSSTYKNSECYNNTPKYISHY--NIPV 420
           K   II  ++N+     S Y N   YN    Y  +Y   IPV
Sbjct: 77  KERKIISSLSNNYISNISNYNNDNNYNKKLYYNINYIEQIPV 118


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 368 IKYQWLKFNYYRFRSAENHTRSLWLQKF*Y 279
           +KYQW  F+ Y F S E    ++   ++ Y
Sbjct: 34  VKYQWKYFD-YNFGSDEKRQAAIQSGEYNY 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,715
Number of Sequences: 438
Number of extensions: 3817
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)