Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00191
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08620.1 68417.m01419 sulfate transporter identical to sulfat...    27   9.0  

>At4g08620.1 68417.m01419 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:3777483
          Length = 649

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -3

Query: 560 VATCTSFKVPNII*QITNDQTMTSSTYKNSECYNNTPKYISHYNIPVQLKYKN*SIFKFP 381
           +A   SF    I+ Q+T  +T       NS  Y NT +Y     IP  L  +  S   F 
Sbjct: 482 IAVVISFA--KILLQVTRPRTTVLGKLPNSNVYRNTLQYPDAAQIPGILIIRVDSAIYFS 539

Query: 380 TINFIK 363
             N+++
Sbjct: 540 NSNYVR 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,456
Number of Sequences: 28952
Number of extensions: 243623
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)