Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00190
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 144 9e-36
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 40 4e-04
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 40 4e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 39 9e-04
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 38 0.002
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 36 0.006
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 33 0.033
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 32 0.10
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 31 0.18
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.23
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.54
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.2
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 28 1.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 28 1.6
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 28 1.6
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 27 2.9
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 27 2.9
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 3.8
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 5.0
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 6.6
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 6.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.6
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 8.8
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 144 bits (350), Expect = 9e-36
Identities = 75/166 (45%), Positives = 98/166 (59%)
Frame = +1
Query: 256 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 435
RK+TV IVL+D+ D R+ D+V+I PCP +KY +R+ +LP+ D+V
Sbjct: 84 RKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTV 143
Query: 436 EGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWLLIP*YT 615
EGLTG+LF+VYLKPYF+EAYRPI G+ K F
Sbjct: 144 EGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIH 203
Query: 616 VTVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ RE+EE +L VGYDDIGGCR+Q+AQI+E+VELPLRHP L
Sbjct: 204 WEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQL 249
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +2
Query: 68 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 247
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 248 GK 253
GK
Sbjct: 81 GK 82
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI 632
D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI
Sbjct: 170 DLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPI 209
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 39.9 bits (89), Expect = 4e-04
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y+ +GG KQ+ +IKE++ELP++HP L
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPEL 170
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y DIGG Q+ +IKE VELPL HP L
Sbjct: 190 YADIGGLESQIQEIKEAVELPLTHPEL 216
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 38.7 bits (86), Expect = 9e-04
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHP 747
V Y D+GGC++Q+ +++E+VELPL P
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSP 202
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+AV + IGG + Q+AQI+++VELP ++P L
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPEL 304
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRH 744
RE E+ N V + DIGG + ++KE VE PL H
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTH 570
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 616 VTVNRLKREEEEEALNA--VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V++NR+++E+ V +DDIGG + +++ ++LPL+ P L
Sbjct: 633 VSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPEL 680
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 33.5 bits (73), Expect = 0.033
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ + +GG +Q+ +++E++ELPL++P L
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPEL 157
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 628 RLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
R K E E + + DIGG + ++ E+V +P++HP +
Sbjct: 158 RQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEV 199
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+++ ++ +GG + Q+KEMV LPL +P +
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEI 291
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.23
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +1
Query: 544 PSSSKWSKQIHHHFASWLLIP*YTVTVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEM 723
PS+S + Q H + +L P +++ L+ +E + V Y D+GG Q +++E
Sbjct: 95 PSASV-ALQRHSNALVDILPPEADSSISMLRPDERPD----VSYADVGGLDVQKQEVREA 149
Query: 724 VELPLRHPSL 753
VELPL L
Sbjct: 150 VELPLTQGDL 159
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
++ IGG + Q+KEMV LPL +P +
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEV 397
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 93 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 206
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V +DDIGG + + Q+ + V PL++P +
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEV 114
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 727 PPSP*-FAPVVYDNRRCHHSRQXXXXXXXXXXLIGSPSQCITVSGA-TMQNGDGSVSTTL 554
PP+P F+ +Y N++ + S Q SP T S A T+ NG S S
Sbjct: 275 PPTPSQFSAFMYQNQQSYLSPQSHYENPLSISSRPSPCCPSTPSSAVTLSNGFDSQSNAY 334
Query: 553 NSTARMPPRTMK 518
N++ PP K
Sbjct: 335 NNSGTGPPMLYK 346
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 625 NRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLR 741
+R+K E +E Y DIGG KQ+ ++ E + LP++
Sbjct: 169 SRVKAMEVDEKPTE-RYSDIGGLSKQIEELFEAIVLPMQ 206
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 436 QLNHQLAVCGLV---FHISLKDTELWI 365
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 436 QLNHQLAVCGLV---FHISLKDTELWI 365
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 406 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 296
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 114 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKAN 254
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V +DDI G +KE V LP++ P L
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQL 154
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 92 PD-DLSTAILRRKDRPNRLIVEEAVSD 169
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 610 YTVTVNRLKREEEEEAL--NAVGYDDIGGCRKQLAQIKEMVELPLRHPS 750
Y +N+LKRE EE + N Y + G + A ++ + HPS
Sbjct: 71 YEKDINKLKRELEELGVEANTASYRNRGERSELAASNNQVTHIDQEHPS 119
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 65 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 223
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 487 EAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWL 597
+A++P+ PS+S P+SS + H H + L
Sbjct: 441 KAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSL 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,188
Number of Sequences: 5004
Number of extensions: 65660
Number of successful extensions: 201
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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