Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00190
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 92 5e-19
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 42 5e-04
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 37 0.015
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 32 0.43
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 31 1.0
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18) 30 2.3
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 4.1
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23) 28 7.1
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 28 7.1
SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17) 28 7.1
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4) 28 9.4
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 91.9 bits (218), Expect = 5e-19
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = +2
Query: 95 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 253
D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK
Sbjct: 5 DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGK 57
Score = 86.2 bits (204), Expect = 3e-17
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+K
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVK 144
Score = 61.3 bits (142), Expect = 8e-10
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 631 LKREEEEEALNAVGYDDIGGCRKQLAQIKE 720
+KREEEEE+LN VGYDDIGGCRKQLAQIKE
Sbjct: 143 VKREEEEESLNEVGYDDIGGCRKQLAQIKE 172
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 238 LAQRQTRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 366
L + + RK+TVCIVLSDD D+KIRM DVV
Sbjct: 53 LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N V +DDIGG +++E+V+ P+ HP
Sbjct: 298 RETVVEVPN-VSWDDIGGLEGVKRELQELVQYPVEHP 333
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 619 TVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
TV ++ EE+ + V Y DIGGC++Q+ +++E+VE PL HP
Sbjct: 69 TVTMMQVEEKPD----VTYSDIGGCKEQIDKLREVVETPLLHP 107
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 616 VTVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
VTV +L++ +E Y DIGG Q+ +IKE VELPL HP L
Sbjct: 366 VTVMKLEKAPQES------YADIGGLDTQIQEIKESVELPLTHPEL 405
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y+ +GG KQ+ +IKE++ELP++HP L
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVKHPEL 202
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 640 EEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+++ EA V + IGG + Q+ ++EM+E+PL +P L
Sbjct: 244 KKDSEAKKGVSFQSIGGLKTQIQAVREMIEMPLTNPEL 281
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHP 747
V + D+GG ++KE VE PL+HP
Sbjct: 534 VHWSDVGGNEMIKRKLKEAVEWPLKHP 560
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 37.1 bits (82), Expect = 0.015
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ Y D+GG +Q+ +++E++ELPL +P L
Sbjct: 132 ISYSDVGGLSEQIRELREVIELPLTNPEL 160
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V +D +GG KQ+ +KEM+ PL +P +
Sbjct: 881 VKFDSVGGLNKQIQALKEMILFPLVYPEV 909
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 649 EEALNAVGYDDIGGCRKQLAQIKEMVELPLRH 744
EE N V Y +IGG Q +I+E VELPL H
Sbjct: 156 EEKPN-VSYAEIGGMDIQKQEIREAVELPLTH 186
>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
Length = 1106
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 430 SVEGLTGNLFEVYLKP--YFMEAYRPIHLTTPSWSGGA-CAPSSSKWSKQIHHHFASWL 597
+++G +F L+P ++ EA R +P W GGA AP+ S + FA W+
Sbjct: 571 TIDGTPNKVFSQGLRPTDFWREAKRRFVRPSPGWHGGAPAAPAIGPESFYGDNKFALWI 629
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 429 IINWQYVDSFS-IFH*RTRSYGYHIRKTHT 343
II W Y +S+ IFH TR +G H+ T T
Sbjct: 2525 IIAWVYPESWGPIFHYNTRGWGVHLWLTRT 2554
>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
Length = 172
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 634 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 729
KREEE E L + + C+K+L ++E++E
Sbjct: 63 KREEELELLLETRTEKLSECKKRLLDLEEIIE 94
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 634 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 729
KREEE E L + + C+K+L ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695
>SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)
Length = 512
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Frame = +1
Query: 439 GLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIH-------HHFASWL 597
G+T N F + PYFM + + W+ C K +IH A++
Sbjct: 241 GMTENFFILLENPYFMSVPKVLTKNVFGWAFSKCLYWDPKCQTRIHVMCKKTGEEMATFT 300
Query: 598 LIP*YTV-TVNRLKREEE--EEALNAVGYDD 681
P + +N + +EE E ++ VGY D
Sbjct: 301 TDPVFVFHHINAFENKEEIVEIVVDVVGYKD 331
>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
Length = 85
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 429 IINWQYVDSFSIFH*RTRSYGYHIRKTH--TKVVSHD 325
+++ Q++D+ +FH RS +R TH +VV HD
Sbjct: 35 VVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHD 71
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ + D+GG +I + ++LPL HP L
Sbjct: 809 ISWKDVGGLDSVKEEILDTIQLPLLHPEL 837
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,668,716
Number of Sequences: 59808
Number of extensions: 520522
Number of successful extensions: 1437
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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