Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00190
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 172 3e-43
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 163 9e-41
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 163 9e-41
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 38 0.010
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 37 0.018
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 37 0.018
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 37 0.018
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 37 0.018
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 34 0.094
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 33 0.16
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 30 2.0
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 30 2.0
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 30 2.0
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 30 2.0
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 30 2.0
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 8.2
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 8.2
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 28 8.2
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 8.2
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 8.2
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 8.2
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 172 bits (418), Expect = 3e-43
Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Frame = +1
Query: 256 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 435
RKE+V I++SD++CP+EK+RM DVVSI P P++ YG R+H+LPIDD++
Sbjct: 70 RKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTI 129
Query: 436 EGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWLLIP*YT 615
EGLTGNLF+V+LKPYF+EAYRP+H A K + + ++ P
Sbjct: 130 EGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVET--EPAPACIVSPDTM 187
Query: 616 VTV--NRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ + +KREEEEE++N +GYDD+GG RKQLAQIKEMVELPLRHP L
Sbjct: 188 IHYEGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQL 235
Score = 81.4 bits (192), Expect = 6e-16
Identities = 38/63 (60%), Positives = 51/63 (80%)
Frame = +2
Query: 86 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKPARK 265
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK ++
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72
Query: 266 PFA 274
A
Sbjct: 73 SVA 75
Score = 64.9 bits (151), Expect = 6e-11
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PIK
Sbjct: 156 DIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIK 196
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N + DIGG + +++E+V+ P+ HP
Sbjct: 471 REAVVETPNTT-WSDIGGLQNVKRELQELVQYPVEHP 506
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 163 bits (397), Expect = 9e-41
Identities = 89/169 (52%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Frame = +1
Query: 256 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 435
R+ETV IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+LPIDD++
Sbjct: 70 RRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTI 128
Query: 436 EGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWLLIP*YT 615
EGLTGNLF+V+L+PYF +AYRP+H A K + A ++ T
Sbjct: 129 EGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPACIVAPDT 185
Query: 616 V---TVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V + +KREEEEEALN VGYDD+GG RKQLAQIKEMVELPLRHP L
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQL 234
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/60 (61%), Positives = 51/60 (85%)
Frame = +2
Query: 86 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKPARK 265
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK R+
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIK
Sbjct: 155 DIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIK 195
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N + DIGG + +++E+V+ P+ HP
Sbjct: 470 REAVVETPNTT-WSDIGGLQNVKRELQELVQYPVEHP 505
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 163 bits (397), Expect = 9e-41
Identities = 89/169 (52%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Frame = +1
Query: 256 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 435
R+ETV IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+LPIDD++
Sbjct: 70 RRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTI 128
Query: 436 EGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWLLIP*YT 615
EGLTGNLF+V+L+PYF +AYRP+H A K + A ++ T
Sbjct: 129 EGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVE---FKVVETDPAPACIVAPDT 185
Query: 616 V---TVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V + +KREEEEEALN VGYDD+GG RKQLAQIKEMVELPLRHP L
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQL 234
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/60 (61%), Positives = 51/60 (85%)
Frame = +2
Query: 86 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKPARK 265
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK R+
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIK
Sbjct: 155 DIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIK 195
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N + DIGG + +++E+V+ P+ HP
Sbjct: 470 REAVVETPNTT-WSDIGGLQNVKRELQELVQYPVEHP 505
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHP 747
+DDIGGC Q+ ++KE VELPL HP
Sbjct: 182 FDDIGGCESQIQELKESVELPLTHP 206
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 619 TVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
TV ++ EE+ + V Y D+GGC+ Q+ +++E+VE PL HP
Sbjct: 162 TVTMMQVEEKPD----VTYSDVGGCKDQIEKLREVVETPLLHP 200
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y+ +GG KQ+ +IKE++ELP++HP L
Sbjct: 158 YEMVGGLDKQIKEIKEVIELPVKHPEL 184
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHP 747
Y D+GG +Q+ +IKE VELPL HP
Sbjct: 187 YADVGGLDQQIQEIKEAVELPLTHP 211
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y+ +GG Q+ +IKE++ELP++HP L
Sbjct: 153 YEMVGGLDTQIKEIKEVIELPVKHPEL 179
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y+ +GG Q+ +IKE++ELP++HP L
Sbjct: 174 YEMVGGLDTQIKEIKEVIELPVKHPEL 200
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ Y D+GG +Q+ +++E+VELPL +P L
Sbjct: 139 ISYSDVGGLAEQIRELREVVELPLINPEL 167
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ Y D+GG +Q+ +++E+VELPL +P L
Sbjct: 147 ISYSDVGGLAEQIRELREVVELPLINPEL 175
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 625 NRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRH 744
+R+K E +E Y DIGGC KQ+ ++ E V LP+ H
Sbjct: 161 SRVKAMEVDERPTEQ-YSDIGGCDKQIQELIEAVVLPMTH 199
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ Y DIGG Q +++E VELPL H L
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGEL 186
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPS 750
+D+IGGC + +A++K+ + LPLR S
Sbjct: 79 WDEIGGCEELVAELKDRIILPLRFAS 104
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPS 750
+D+IGGC + +A++K+ + LPLR S
Sbjct: 82 WDEIGGCEELVAELKDRIILPLRFAS 107
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 416
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 384 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 414
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 416
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 416
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 384 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 414
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 416
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 661 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++VG+D +GG + +KE+V P+ +P +
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEV 416
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 649 EEALNAVGY--DDIGGCRKQLAQIKEMVELPLRHPSL 753
+E L+ G DD+ GC A ++E V LP +P+L
Sbjct: 167 DEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNL 203
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 65 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 214
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 403 RVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHH 582
R+H+ ++ + +G ++ +V L+ F Y I T +GG+ P+ S+ KQ HH+
Sbjct: 112 RIHVHRLECASDGGILDMDDV-LEEVFDLNYDQILAITDEANGGSTTPTYSQIQKQQHHY 170
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 403 RVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHH 582
R+H+ ++ + +G ++ +V L+ F Y I T +GG+ P+ S+ KQ HH+
Sbjct: 76 RIHVHRLECASDGGILDMDDV-LEEVFDLNYDQILAITDEANGGSTTPTYSQIQKQQHHY 134
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 403 RVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHH 582
R+H+ ++ + +G ++ +V L+ F Y I T +GG+ P+ S+ KQ HH+
Sbjct: 112 RIHVHRLECASDGGILDMDDV-LEEVFDLNYDQILAITDEANGGSTTPTYSQIQKQQHHY 170
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 403 RVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHH 582
R+H+ ++ + +G ++ +V L+ F Y I T +GG+ P+ S+ KQ HH+
Sbjct: 112 RIHVHRLECASDGGILDMDDV-LEEVFDLNYDQILAITDEANGGSTTPTYSQIQKQQHHY 170
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 65 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 214
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,062,494
Number of Sequences: 27780
Number of extensions: 383311
Number of successful extensions: 962
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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