Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00190
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 162 3e-40
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 161 3e-40
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 157 1e-38
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 42 3e-04
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 42 4e-04
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 40 0.002
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 40 0.002
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 40 0.002
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 40 0.002
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 38 0.005
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 32 0.47
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 32 0.47
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 32 0.47
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 32 0.47
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 31 0.62
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 31 0.82
At5g10520.1 68418.m01218 protein kinase family protein contains ... 31 1.1
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.1
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 30 1.4
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 30 1.4
At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1) con... 28 5.8
At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1) con... 28 5.8
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 28 7.7
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 162 bits (393), Expect = 3e-40
Identities = 84/174 (48%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Frame = +1
Query: 238 LAQRQTRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 417
L + + RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 418 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWL 597
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ G S K I A +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSVEFKVIETDPAEYC 178
Query: 598 LIP*YT--VTVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++ T + E+EE L+ VGYDD+GG RKQ+AQI+E+VELPLRHP L
Sbjct: 179 VVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQL 232
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/59 (64%), Positives = 49/59 (83%)
Frame = +2
Query: 77 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 253
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGK 66
Score = 74.1 bits (174), Expect = 9e-14
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+K
Sbjct: 154 DLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVK 194
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N V ++DIGG +++E V+ P+ HP
Sbjct: 468 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHP 503
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 161 bits (392), Expect = 3e-40
Identities = 84/174 (48%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Frame = +1
Query: 238 LAQRQTRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 417
L + + RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 418 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWL 597
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ G S K I A +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSVEFKVIETDPAEYC 178
Query: 598 LIP*YT--VTVNRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++ T + E+EE L+ VGYDD+GG RKQ+AQI+E+VELPLRHP L
Sbjct: 179 VVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQL 232
Score = 87.4 bits (207), Expect = 9e-18
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = +2
Query: 77 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 253
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGK 66
Score = 74.1 bits (174), Expect = 9e-14
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+K
Sbjct: 154 DLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVK 194
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N V ++DIGG +++E V+ P+ HP
Sbjct: 468 RETVVEVPN-VSWNDIGGLENVKRELQETVQYPVEHP 503
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 157 bits (380), Expect = 1e-38
Identities = 82/175 (46%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Frame = +1
Query: 238 LAQRQTRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 417
L + + RK+TVCI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 418 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHLTTPSWSGGACAPSSSKWSKQIHHHFASWL 597
P+DD++EG++GN+F+ YLKPYF+EAYRP+ G S K I A +
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGG---MRSIEFKVIETDPAEYC 179
Query: 598 LIP*YTVTV---NRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
++ T +KRE+EE L+ VGYDD+GG RKQ+AQI+E+VELPLRHP L
Sbjct: 180 VVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQL 233
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/60 (60%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 253
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Score = 74.1 bits (174), Expect = 9e-14
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +3
Query: 513 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIK 635
D F+VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIK
Sbjct: 155 DLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIK 195
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 637 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHP 747
RE E N V ++DIGG +++E V+ P+ HP
Sbjct: 469 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHP 504
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHP 747
Y DIGGC++Q+ +I+E+VELP+ HP
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHP 228
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/27 (51%), Positives = 24/27 (88%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHP 747
V Y+D+GGC++Q+ +++E+VELP+ HP
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHP 191
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
YD IGG +Q+ +IKE++ELP++HP L
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPEL 186
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
YD IGG +Q+ +IKE++ELP++HP L
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPEL 186
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y DIGG Q+ +IKE VELPL HP L
Sbjct: 187 YADIGGLEAQIQEIKEAVELPLTHPEL 213
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1
Query: 673 YDDIGGCRKQLAQIKEMVELPLRHPSL 753
Y DIGG Q+ +IKE VELPL HP L
Sbjct: 187 YADIGGLEAQIQEIKEAVELPLTHPEL 213
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V Y+DIGGC Q +I+E VELPL H L
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHEL 180
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ Y +GG Q+ +++E +ELPL +P L
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPEL 164
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 625 NRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRH 744
+R+K E +E Y+DIGG KQ+ ++ E + LP+ H
Sbjct: 155 SRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTH 193
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+ Y +GG Q+ +++E +ELPL +P L
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPEL 164
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 625 NRLKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRH 744
+R+K E +E Y+DIGG KQ+ ++ E + LP+ H
Sbjct: 154 SRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTH 192
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHP 747
+ +DDIGG + + +KEMV PL +P
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYP 404
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
+G++D+GG IKEM+ELP + P +
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELPSKFPKI 869
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 72 KWQIIKVLMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSK 248
++ +I +L Y R ++ R P L+ +SA T +++ +P W NF + +
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNFTYEELAVATDY 152
Query: 249 ANPQ 260
NP+
Sbjct: 153 FNPE 156
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 229 TTEELKLLHFGL*KCHD*VVIAD 161
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V +DDIG K +KE+V LPL+ P L
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPEL 845
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 667 VGYDDIGGCRKQLAQIKEMVELPLRHPSL 753
V +DDIG +KE+V LPL+ P L
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPEL 988
>At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1)
contains Pfam PF02365: No apical meristem (NAM) domain;
identical to NAC1 GB:AAF21437 GI:6649236 from
[Arabidopsis thaliana]
Length = 324
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 629 RFTVTVYYGIRSHDAKW*WICFDHFELDGAHAPPDH 522
R T+ Y G K W+ + F L G+H PP+H
Sbjct: 120 RKTLVFYQGRAPRGRKTDWVMHE-FRLQGSHHPPNH 154
>At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1)
contains Pfam PF02365: No apical meristem (NAM) domain;
identical to NAC1 GB:AAF21437 GI:6649236 from
[Arabidopsis thaliana]
Length = 257
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 629 RFTVTVYYGIRSHDAKW*WICFDHFELDGAHAPPDH 522
R T+ Y G K W+ + F L G+H PP+H
Sbjct: 53 RKTLVFYQGRAPRGRKTDWVMHE-FRLQGSHHPPNH 87
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 322 GSSEFSHQGNYHLRARCKRFPCGFAFE 242
G + +GNY CKR CGF ++
Sbjct: 334 GYDHYRRRGNYFDCGACKRASCGFVYD 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,155
Number of Sequences: 28952
Number of extensions: 358575
Number of successful extensions: 1118
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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