Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00189
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 141 7e-35
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 94 1e-20
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 87 1e-18
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 83 3e-17
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 78 7e-16
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 73 2e-14
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 73 4e-14
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 70 3e-13
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 70 3e-13
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 62 7e-11
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 55 6e-09
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 54 1e-08
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 44 1e-05
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 33 0.027
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 27 1.4
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.5
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 141 bits (341), Expect = 7e-35
Identities = 67/91 (73%), Positives = 72/91 (79%)
Frame = +1
Query: 259 SVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKV 438
S Y GGVFFL IHF +YPFKPPKV F TRIYH NINS G ICLDIL+D WSPALTISKV
Sbjct: 43 SPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKV 102
Query: 439 LLSRCSLLTDCNPADPLVGSIATHIYRIGKS 531
LLS CSLLTD NP DPLV IA H+Y+ +S
Sbjct: 103 LLSICSLLTDPNPDDPLVPEIA-HVYKTDRS 132
Score = 56.8 bits (131), Expect = 2e-09
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +2
Query: 143 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGP 253
KRI +ELA++ DPP +CSAGP GD+L+ W +TI+GP
Sbjct: 4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGP 40
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 94.3 bits (224), Expect = 1e-20
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 GSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTIS 432
G+ YEGG F +DI +YPF+PPK+ F T+IYH N++SQ G ICLDILKD WSP T+
Sbjct: 45 GTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMK 104
Query: 433 KVLLSRCSLLTDCNPADPLVGSIA 504
L+S SLL P++P +A
Sbjct: 105 SALISLQSLLCTPEPSNPQDAQVA 128
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 87.4 bits (207), Expect = 1e-18
Identities = 42/82 (51%), Positives = 51/82 (62%)
Frame = +1
Query: 259 SVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKV 438
S YEGG F L++ EYP PP V F T+IYH N++ G ICL LK +WSPAL I V
Sbjct: 44 SAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTV 103
Query: 439 LLSRCSLLTDCNPADPLVGSIA 504
LLS +L+ NP DPL +A
Sbjct: 104 LLSIQALMGAPNPDDPLDNDVA 125
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2
Query: 143 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPQ 256
KRI KE+ +T DPPP A P DNL + T+ GPQ
Sbjct: 5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQ 42
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 82.6 bits (195), Expect = 3e-17
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 SVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN-WSPALTISK 435
SVY GG F + F +YPF+PP + F TRIYH N +S+G +CL ILK + P++ +
Sbjct: 49 SVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRS 108
Query: 436 VLLSRCSLLTDCNPADPLVGSIA 504
VL LL + NP DPLV SIA
Sbjct: 109 VLEQILQLLREPNPDDPLVASIA 131
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 116 MSKALGTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGP 253
M+ A +S++R+ KE +++ P P+ DNL+ W T LGP
Sbjct: 1 MASASPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGP 46
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 78.2 bits (184), Expect = 7e-16
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Frame = +1
Query: 253 TGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTI 429
T + YEGG + LDIH YP PP V F+T+I H NI+ + G +C+DILK +WSPA ++
Sbjct: 45 TETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSL 104
Query: 430 SKVLLSRCSLLTDCNPADPLVGSIATHIYRIGKST 534
L+ SLL++ + + PL A + R G T
Sbjct: 105 QSACLAIISLLSNYDASSPL-NVDAAKLLRTGDKT 138
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 73.3 bits (172), Expect = 2e-14
Identities = 33/75 (44%), Positives = 45/75 (60%)
Frame = +1
Query: 265 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 444
YEG F + + F YP+ PP + F + ++H N++ G ICLDILKD WS + +LL
Sbjct: 73 YEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILL 132
Query: 445 SRCSLLTDCNPADPL 489
S SLL + N A PL
Sbjct: 133 SLQSLLGEPNNASPL 147
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 72.5 bits (170), Expect = 4e-14
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +1
Query: 265 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 444
+E G F L + F +YP KPP V F + ++H N+ + G +CLDIL++ WSP ++ +L
Sbjct: 48 FEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILT 107
Query: 445 SRCSLLTDCNPADPLVGSIATHIYRIGK 528
S SLL D N A P + A ++R K
Sbjct: 108 SIQSLLNDPNNASP-ANAEAAQLHRENK 134
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 134 TSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGP 253
T+ +R+ ++ + DPP SA P DN+ W + I+GP
Sbjct: 4 TARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGP 43
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +1
Query: 265 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 444
Y+GG F I YP PPKV +IYH NI+ +G +CL+IL+ +W+P L ++ +L+
Sbjct: 65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILV 124
Query: 445 SRCSLLTDCNPADPLVGSIATHIYR 519
L N DPL A +++
Sbjct: 125 GLQFLFLSPNAEDPLNKEAAADLHK 149
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 69.7 bits (163), Expect = 3e-13
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +1
Query: 265 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL--KDNWSPALTISKV 438
+EGG++ L + F EYP +PPK F ++H N+ G +CL IL ++ W PA+TI ++
Sbjct: 53 WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQI 112
Query: 439 LLSRCSLLTDCNPADP 486
LL LL D N A P
Sbjct: 113 LLGIQDLLDDPNIASP 128
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 61.7 bits (143), Expect = 7e-11
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +1
Query: 265 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSP---ALTIS 432
Y GG++ + + EYP+K P + F RI+H NI+ G +CLD++ WSP + I
Sbjct: 44 YSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIF 103
Query: 433 KVLLSRCSLLTDCNPADPLVGSIATHIYR 519
+V L + LL N +DPL G A + R
Sbjct: 104 EVFLPQ--LLRYPNASDPLNGEAAALLLR 130
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 55.2 bits (127), Expect = 6e-09
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Frame = +1
Query: 259 SVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK------------ 402
++YEGG F + F +YP PPK+ F T I+H N++ G +C+ IL
Sbjct: 48 TLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDA 107
Query: 403 -DNWSPALTISKVLLSRCSLLTDCNPADP 486
+ W P + +L+S S+L+ N P
Sbjct: 108 GERWLPVHSPETILISVISMLSSPNDESP 136
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Frame = +1
Query: 256 GSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL------------ 399
G+ +EGG++ + F +YP PP + F +H N+ G +C+ IL
Sbjct: 47 GTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYES 106
Query: 400 -KDNWSPALTISKVLLSRCSLLTDCN 474
+ WSP ++ K+LLS S+L + N
Sbjct: 107 SSERWSPVQSVEKILLSVMSMLAEPN 132
Score = 33.9 bits (74), Expect = 0.016
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 MSKALGTSAKRIQKELAEITLDPPPNCSAGPKG-DNLYEWVSTILGP 253
MSKA+ + +R+ KE E+T + P +AGP D+ + W I GP
Sbjct: 1 MSKAM--ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGP 45
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +1
Query: 265 YEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICL---DILKDNWSPALTISK 435
YEGG + + F P+YPFKPP + T N++ +CL D +W+P+ +S
Sbjct: 49 YEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTR--LCLSFSDFHPKSWNPSWMVST 106
Query: 436 VLLSRCSLLT 465
+L+ S +T
Sbjct: 107 ILVGLVSFMT 116
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 143 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGP 253
KR+ KE + +P A P +N+ EW I GP
Sbjct: 8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGP 44
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 33.1 bits (72), Expect = 0.027
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 259 SVYEGGVFFLDIHFSPEYPFKPPKVTFRTRI 351
SV+E ++ L IH YP PP VTF +RI
Sbjct: 51 SVHENRIYSLKIHCDANYPDAPPIVTFVSRI 81
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 244 PWATGSVYEGGV-FFLDIHFSPEYPFKPPKVTFRT 345
PW + GG+ FFL I YP P K F T
Sbjct: 258 PWKLFMIITGGITFFLSIFLFFYYPDNPSKARFLT 292
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 368 LMLQ*YILVRNVTFGGLNGYSGEK*MSR 285
L+ Q YILV+ T + GY G K + R
Sbjct: 171 LLTQCYILVQGTTVAVMGGYKGLKEVRR 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,721
Number of Sequences: 5004
Number of extensions: 57900
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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