Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00188
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   1.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   8.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.1  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 640 IFNTLACKLHDCLKVNSVQSTIITYPL 560
           ++N    +L + LK  S+ S ++TY L
Sbjct: 360 VYNKEISRLVETLKFQSITSAVVTYEL 386


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 616 LHDCLKVNSVQSTIITYPLAWF 551
           L DC+   + +S ++TY + W+
Sbjct: 273 LCDCVVKEAQKSLVLTYEMRWY 294


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 448 VLLVFASNWSPQACSLISVFKLCFLPLNAHW 540
           V+ +  S W+P+ C  +      ++PL   W
Sbjct: 481 VMRICVSAWNPKDCDPLITLIETWMPLLPQW 511


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 201 RRWIRASTSPYETK 242
           RRW+ A + P+E +
Sbjct: 475 RRWVSAMSRPFEVR 488


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 430 PVVPTHPATRRRALVTRPRLPKPTARHVPADIDDNEPKARNSVVR 296
           PV+PT+   + +  V +P +PK      P     +  ++ N   R
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPNPASR 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,023
Number of Sequences: 336
Number of extensions: 4042
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)