Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00188
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    33   0.059
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.72 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    26   5.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.9  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 256 DNFLRRFLYARKHDVQQSFELLVRYHQYRRE 348
           D  L RFL ARK ++QQS E+ ++  ++R+E
Sbjct: 50  DATLLRFLRARKFNLQQSLEMFIKCEKWRKE 80


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 470 FEANTRSTQRPR-LSRCANTPGNPSASARNTPPSAEAHSSS 351
           F AN  S   P  +S   N P  PSA  R TPP+ +  SS+
Sbjct: 336 FTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSA 376


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 458 TRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSSCSR 342
           TR++    ++  ++TP + S+S+ ++P S+ + SSS S+
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSK 177


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 256 DNFLRRFLYARKHDVQQSFELLVRYHQYRREHD--ELWASADGGVLRALADGLPGVLAQR 429
           D  L RFL ARK  V  S ++L     +R++ +   +    + G+ +         +  +
Sbjct: 52  DLTLLRFLKARKFVVTDSSDMLANAIVWRQQANLRSIMVRGENGLNQNFVKASMYFIWGQ 111

Query: 430 DRRGRCVLLVFASNWSP 480
           D++GR ++ +   N+ P
Sbjct: 112 DKKGRAIVFLNLHNFIP 128


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 512 SLKTEINEHA*GDQFEANTRSTQRPRLSRCANTPGNPSA-SARNTPPSAEAHSS 354
           SLK++    + GD    + ++ +R  +  C N    P+   AR  PP  +  S+
Sbjct: 23  SLKSKFESLSTGDLTNLDEKTAKRRTVKGCKNGTSEPNVFKARPIPPPRQVSST 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,183
Number of Sequences: 5004
Number of extensions: 66656
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)