Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00188
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0035 + 40637102-40637197,40638594-40638948,40639664-406397... 34 0.11
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 33 0.19
03_01_0604 + 4449416-4449766,4450150-4450374 32 0.43
12_02_0997 - 25121029-25121126,25121365-25121405,25121565-251218... 31 1.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.1
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 29 3.1
01_06_0162 + 27117939-27118466,27119782-27119970,27120068-271201... 29 3.1
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 29 4.0
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504... 29 5.3
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 29 5.3
08_01_0553 - 4846808-4847029,4847131-4847748 28 7.1
03_04_0092 + 17255548-17256046,17257838-17258262 28 7.1
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 28 9.3
>01_07_0035 +
40637102-40637197,40638594-40638948,40639664-40639700,
40639850-40639955,40640086-40640196,40640334-40640468
Length = 279
Score = 34.3 bits (75), Expect = 0.11
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 DNF-LRRFLYARKHDVQQSFELLVRYHQYRREHDELWASADGGVLRALADGLPGVLAQRD 432
DN LRRFL AR H+V+++ +L++ ++RRE + + V L D + D
Sbjct: 35 DNLTLRRFLRARDHNVEKASAMLLKALRWRREAVPGGSVPEEKVQSDLDDD-KVYMGGAD 93
Query: 433 RRGRCVLLVF 462
R GR +LL F
Sbjct: 94 RTGRPILLAF 103
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -3
Query: 430 PVVPTHPATRRRALVTRPRLPKPTARHVPADIDDNEPKARNSVVRRVYARIK 275
P PTH A R L T PR P P+ H P R V R+ R++
Sbjct: 38 PRAPTHVALLPRPLYTNPRQPPPSRLHRSPPHPPPPPLRRTHVAARLVERVR 89
>03_01_0604 + 4449416-4449766,4450150-4450374
Length = 191
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 479 GDQFEANTRSTQRPRLSRCANTPGNPSASARNTPPSAEAHS 357
G +F + + R+ CAN P PS SAR PPSA S
Sbjct: 44 GGEFGRSVVEAEAERVI-CANCPHRPSRSARPPPPSANVRS 83
>12_02_0997 -
25121029-25121126,25121365-25121405,25121565-25121805,
25121884-25121946,25122719-25122852,25122904-25123006,
25123079-25123281,25123382-25123468,25123886-25124014,
25124241-25124315,25124731-25124816,25124926-25125162
Length = 498
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 364 PTARHVPADIDDNEPKARNSVVRRVY-ARIKISSKNCHLTSAF 239
P+ HV D+ D + K RN+V+ +V+ + I+IS L S F
Sbjct: 365 PSKSHVEIDVRDIDEKRRNNVIEKVHQSAIEISKNRGVLLSEF 407
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 599 GELGPIHYNYVSVGLVLDIRQCAFNGKKQSLKTEINEHA*G 477
G L +HY ++++ LVL R F GK Q L I A G
Sbjct: 19 GGLIAVHYTFLALNLVLGARVRVFAGKSQVLMASIIHGAFG 59
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 125 NERLCEVTRKRLTDGDRQRALLGLKEAVDSSLNLALRDKSRCQVTI 262
+ R+C +T K + LLG + +DS+L+L + D ++ Q +I
Sbjct: 277 SRRICNMTSKASKSKETYEYLLGEIDNLDSNLDLIIEDAAQNQASI 322
>01_06_0162 +
27117939-27118466,27119782-27119970,27120068-27120159,
27121126-27121185,27121302-27121392,27121679-27121882,
27121937-27122338
Length = 521
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 608 LFEGELGPIHYNYVSVGLV-LDIRQCAFNGKKQSLKTEINEHA*GDQFEANTRSTQRPRL 432
LF G L + + + VG++ L ++ N K + K E+ + Q EA R L
Sbjct: 441 LFAGLLFFVGFVLIGVGILYLGLQNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVREGL 500
Query: 431 SRCANTPGNPSAS 393
SR +++P + SAS
Sbjct: 501 SRHSSSPKSSSAS 513
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 125 NERLCEVTRKRLTDGDRQRALLGLKEAVDSSLNLALRDKSRCQVTI 262
+ R+C + K + LLG + +DS+L+L + D ++ Q TI
Sbjct: 836 SRRICNMASKASKSKETYEYLLGEIDNLDSNLDLIIEDAAQNQATI 881
>07_03_0167 -
14649782-14649864,14649954-14650078,14650357-14650400,
14650873-14651003,14652469-14652559,14653335-14653445,
14653623-14653774,14653863-14654067,14654436-14654764,
14654850-14655309
Length = 576
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 434 LSRCANTPGN-PSASARNTPPSAEAHSSSCS 345
L+ C T G+ PS S+ T P+A+ H+ SC+
Sbjct: 74 LTPCLETIGDVPSTSSLQTEPAADHHARSCT 104
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 469 SRRTRGAHSARVYPVVPTHPATRRRALVTRPRLPKPT 359
S R AH A + P++P HP L T P L P+
Sbjct: 66 SLRLSSAHVALLLPLLPLHPRLVSPLLATSPHLLPPS 102
>08_01_0553 - 4846808-4847029,4847131-4847748
Length = 279
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 358 LWASADGGVLRALADGLPGVLAQRDRRGRCVL 453
L++S GGV RA G P L +DR G L
Sbjct: 131 LYSSNGGGVARAHGHGAPAPLLDKDRAGELPL 162
>03_04_0092 + 17255548-17256046,17257838-17258262
Length = 307
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 68 TKPVMNEYAEYDWKLHQMQNERLCEVTRKRL 160
T + E E W+ +MQN R E RKRL
Sbjct: 89 TSSLPTETEEERWRRREMQNRRRLEARRKRL 119
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 341 GGNMTSCGLRQTGACYERSPTGCRVCWHNGID 436
GG+ + C+ CRV WH+GID
Sbjct: 222 GGDAEEIAETECPHCHRMFCASCRVPWHDGID 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,910,463
Number of Sequences: 37544
Number of extensions: 470363
Number of successful extensions: 1708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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