Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00188
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             47   1e-05
SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.8  
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.4  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)                     29   3.1  
SB_5914| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-18)                  29   3.1  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   3.1  
SB_58956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_44562| Best HMM Match : 7tm_1 (HMM E-Value=9e-12)                   28   7.2  
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
 Frame = +1

Query: 256 DNFLRRFLYARKHDVQQSFELLVRYHQYRREHDELWASADGGVLR-ALADGLPGVLAQRD 432
           D  L R+L AR H+V  +F LL  + ++ + + EL    +   LR  L DG P VL   D
Sbjct: 76  DEMLLRYLRARGHNVVAAFALLCSHIEFHKNNPELLKGLNAFELRYILEDGFPCVLPYMD 135

Query: 433 RRGRCVLLVFASNWSPQACSLISVFKLCFLPLNAHWRISRTKPTDT*L*WIGPSSPSNNR 612
             G  ++++F   W     S  ++ +   L L  H   S T  +   +  +  S  ++ +
Sbjct: 136 PVGSTIMVLFPGMWDTDTFSPDTLLQALMLTL-MHLSESLTVQSRGVVLLVDFSEWTSTQ 194

Query: 613 AVY-KLRY*K**LTVYKI 663
           A Y  ++Y K  +T++++
Sbjct: 195 AAYLNIKYIKKIVTIFEV 212


>SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 77  VMNEYAEYDWKLHQMQNERLCEVTRKRLTDGDRQRALLGLKE 202
           +M E   +  +  Q   +R+CE+ R+  TD DR +A   LK+
Sbjct: 257 LMYEIKRFSDESFQGDRKRICELLRELATDSDRHKAKKDLKQ 298


>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 567 YVIIVDWTEFTFKQSCSLQAKVLKMMIDC-LQDCMPVRFKSIHFIGQPWYVETALAVIKP 743
           Y   VDW+       C  + +VL  +I   L + MPV+   +H    PW +     +IK 
Sbjct: 294 YFHSVDWSILNSIHGCERKLQVLLYLIKVGLDNIMPVKSIRLHINDPPWIIAEFNHLIKL 353

Query: 744 YLKA 755
             KA
Sbjct: 354 RQKA 357


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 452 STQRPRLSRCAN-TPGNPSASARNTPPSAEAHSSSCS 345
           +T+ P+ SR ++ +P NP+ S R T P+A  HS S S
Sbjct: 568 NTKPPKTSRTSSPSPDNPNRS-RRTSPNARRHSGSSS 603


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 352  DELWASADGGVLRALADGLPGVL--AQRDRRGRCVLLVFASNWS 477
            DELW + +   L+AL  GLPG L    R+    C ++  A   S
Sbjct: 1274 DELWEAIEHASLKALVAGLPGKLYYEVREEFRNCTVITIAHRLS 1317


>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
          Length = 956

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 382 RPRLPKPTARHVPADIDDNEPKARNSVVRRVYAR 281
           R RLP P     P +ID ++ KA+    R  Y R
Sbjct: 853 RTRLPAPPEAMQPTEIDKDKMKAKEEAYREAYIR 886


>SB_5914| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-18)
          Length = 327

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 463 ASNWSPQA-CSLISVFKLCFLPLNAHWRISRTK 558
           A +WS +A CS+I+    C  P+   WRIS  +
Sbjct: 254 AKSWSAEALCSVIAFTNACMNPVILFWRISEIR 286


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 382 RPRLPKPTARHVPADIDDNEPKARNSVVRRVYAR 281
           R RLP P     P +ID  + KA+    R  Y R
Sbjct: 199 RTRLPAPPEAMQPTEIDKEKMKAKEEAYREAYTR 232


>SB_58956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 229 PTRQKPMSSDNFLRRFLYARKHDVQQSFELLVRYHQYR 342
           P    P++    L+ F  AR+ +V Q++EL  +Y+Q R
Sbjct: 463 PEEPPPIADSTMLKHF--AREAEVNQNYELAAKYYQER 498


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 458 TRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSSCSRR 339
           +RST R R    A TP  PS  +  + PS    SS  S R
Sbjct: 205 SRSTPRSRSRSRARTPSTPSTPSTPSTPSTITTSSRASSR 244


>SB_44562| Best HMM Match : 7tm_1 (HMM E-Value=9e-12)
          Length = 276

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 463 ASNWSPQA-CSLISVFKLCFLPLNAHWRI 546
           A +WS +A CS+I+    C  PL   WRI
Sbjct: 203 AKSWSAEALCSVIAFTNACVNPLILFWRI 231


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -2

Query: 521 KKQSLKTEINEHA*GDQFEANTRSTQRPRLSRCAN-TPGNPSASARNTPPSAEAHSSSC 348
           K ++   ++NEH  GD         +  R+ +  + T    S S +NTP        SC
Sbjct: 351 KNENEHNKLNEHCEGDSHNEGKMDKENERIEQKEDATKSGASGSHQNTPSHIHGFKPSC 409


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 26   NTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVT--RKRLTDGDRQRALLGLK 199
            N + +  +  D+   + +++  +E+D KLHQ+Q + + +V     R+ D   + A L  K
Sbjct: 1846 NKQMSESQRKDAERIEQIIHNKSEFDRKLHQLQCQHMEQVEGHEGRIRDLKTKLATLENK 1905

Query: 200  EAV 208
            EAV
Sbjct: 1906 EAV 1908


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,270,990
Number of Sequences: 59808
Number of extensions: 554244
Number of successful extensions: 3641
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)