Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00188
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical ...    31   0.68 
AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    29   2.7  
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    29   2.7  
Z83116-2|CAB05560.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81112-4|CAB03275.1|  317|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    28   6.3  
AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical
           protein C04E12.4 protein.
          Length = 609

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 26  NTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVTRKRL 160
           N   + E+P+D+YL K   NE     WK +    E++ E    R+
Sbjct: 115 NVERHSEKPYDAYLHKKDKNEEGSIYWKFNLKSTEKILEKLEIRM 159


>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 23  ANTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVTRKR 157
           A   F+ + PH + L+  +  +Y++  +++  + NERLC VT  R
Sbjct: 250 ATILFSWQFPHFNGLSWNLRGDYSKAGYRVMCVTNERLCRVTSLR 294


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 23  ANTRFNCERPHDSYLTKPVMNEYAEYDWKLHQMQNERLCEVTRKR 157
           A   F+ + PH + L+  +  +Y++  +++  + NERLC VT  R
Sbjct: 250 ATILFSWQFPHFNGLSWNLRGDYSKAGYRVMCVTNERLCRVTSLR 294


>Z83116-2|CAB05560.1|  320|Caenorhabditis elegans Hypothetical
           protein M01B2.2 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 478 PQACSLISVFKLCFLPLNAHWRIS 549
           P AC +  +F LCFL  N  W IS
Sbjct: 81  PTACYIGHMFMLCFLECNLIWMIS 104


>Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.12 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 478 PQACSLISVFKLCFLPLNAHWRIS 549
           P AC +  +F LCFL  N  W IS
Sbjct: 81  PTACYIGHMFMLCFLECNLIWMIS 104


>Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical
           protein H13N06.6 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 272 DFYTRVNTTYNRVSSFWFVIINIGGNMTSCGLRQTGACYERSPTGCRVCWHN 427
           D Y+ V    N V   ++ ++N+G    +C L+  G  +E      R  W N
Sbjct: 505 DMYSNVKDWGNGVDEEFYNVLNVGNMNMNC-LKSNGEPFEFESKDSRQSWEN 555


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -3

Query: 490 SMLEETNSRRTRGAHSARVYPVV--PTHPATRRRALVTRPR----LPKPTARHVPADIDD 329
           S L +T+S  +  +  A   P++  PTH  T++      PR    +P PT   VPA +  
Sbjct: 462 STLSKTDSHESSVSTEASQKPLLGPPTHHYTKKSQTQKEPRYSPSIPAPTFLMVPAMMAV 521

Query: 328 NEPKA 314
           N P A
Sbjct: 522 NTPPA 526


>Z81112-4|CAB03275.1|  317|Caenorhabditis elegans Hypothetical
           protein T02B5.4 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 478 PQACSLISVFKLCFLPLNAHWRIS 549
           P AC +  +F LCFL  N  W IS
Sbjct: 81  PTACYVGHMFMLCFLECNLIWMIS 104


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 653 TVNHHFQYLSL*TARLFEGELGPIHYNYVSVGLVLDIRQC 534
           TVNHH+Q + L   R+   ++ PIH    S  L L+   C
Sbjct: 152 TVNHHYQKVVLFRNRMKANKVAPIHTKVQSRHLELEPLCC 191


>AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical
           protein W08E12.3 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 335 NIGGNMTSCGLRQTGACYERSPTGCRVCWHNGIDAGAVCSSCSPR 469
           N G N  +CG + T      +  GC     NG     +C+SC P+
Sbjct: 49  NCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPVCAPMCNSCPPQ 93


>AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.4 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 335 NIGGNMTSCGLRQTGACYERSPTGCRVCWHNGIDAGAVCSSCSPR 469
           N G N  +CG + T      +  GC     NG     +C+SC P+
Sbjct: 49  NCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQ 93


>AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.5 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 335 NIGGNMTSCGLRQTGACYERSPTGCRVCWHNGIDAGAVCSSCSPR 469
           N G N  +CG + T      +  GC     NG     +C+SC P+
Sbjct: 49  NCGCNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQ 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,064
Number of Sequences: 27780
Number of extensions: 396021
Number of successful extensions: 1284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)