Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00188
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative / phos... 36 0.029
At1g05577.1 68414.m00577 hypothetical protein 29 2.6
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 29 4.5
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 28 5.9
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 28 5.9
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 28 5.9
At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein si... 28 7.8
At4g17120.1 68417.m02578 expressed protein 28 7.8
At1g71710.1 68414.m08289 inositol polyphosphate 5-phosphatase, p... 28 7.8
>At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative contains
Pfam PF00650 : CRAL/TRIO domain and PF03765 : CRAL/TRIO,
N-terminus; similar to polyphosphoinositide binding
protein Ssh2p GB:AAB94599 GI:2739046 from [Glycine max]
Length = 255
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 513 LLLTIERTLADIQNQANGYVIIVDWTEFTFKQSCSLQAKVLKMMIDCLQDCMPVRFKSIH 692
++ T+E+ A + +V I D + + +C ++ + + LQDC P R ++
Sbjct: 135 VVYTLEKICARMPRGQEKFVAIGDLQGWGYS-NCDIRGYLAAL--STLQDCYPERLGKLY 191
Query: 693 FIGQPWYVETALAVIKPYLKAKT 761
+ P+ TA VI P++ A T
Sbjct: 192 IVHAPYIFMTAWKVIYPFIDANT 214
>At1g05577.1 68414.m00577 hypothetical protein
Length = 372
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 494 NEHA*GDQFEANTRSTQRPRLSRCANTPGNPSASAR 387
N A D +N +T +PR RC N PGNP R
Sbjct: 331 NSSANNDLMTSN--NTVKPRQQRCRNIPGNPLGHQR 364
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 470 FEANTRSTQRPRLSRCANTPGNPSAS-ARNTPPS 372
F+ N RPR+SR GNP S +RN PPS
Sbjct: 184 FDGNLIIPVRPRVSRYHFVAGNPLDSISRNIPPS 217
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 473 QFEANTRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSS 351
+ E Q+ R + PG AS RN PPSA S +
Sbjct: 135 ELEQLEEQAQQEGFGRWSKVPGAAEASIRNLPPSAVGDSGN 175
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 175 PVTVCESFSSHFTKPFILHLMQFPIVFGVLVHYWF 71
PVTV H KP++++LM + GV +Y F
Sbjct: 308 PVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAF 342
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 175 PVTVCESFSSHFTKPFILHLMQFPIVFGVLVHYWF 71
PVTV H KP++++LM + GV +Y F
Sbjct: 308 PVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAF 342
>At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]
Length = 438
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/81 (23%), Positives = 33/81 (40%)
Frame = -3
Query: 493 MSMLEETNSRRTRGAHSARVYPVVPTHPATRRRALVTRPRLPKPTARHVPADIDDNEPKA 314
++M + +T + + P+ PT P A TR LP P +P+ + P
Sbjct: 338 LTMTYDIGLTKTTNYNQTSMAPLSPTRPRLPPAAAPTRQTLPSPPQMILPSPV---TPSD 394
Query: 313 RNSVVRRVYARIKISSKNCHL 251
+NS V+ S+ H+
Sbjct: 395 KNSGQTDVHNSTPRSASLAHI 415
>At4g17120.1 68417.m02578 expressed protein
Length = 1661
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 531 RTLADIQNQANGYVIIVDWTEFTFKQSCSLQAKVLKMMIDCLQDCMPV 674
RT + N + + +VDW E F + SL VL++++ + PV
Sbjct: 594 RTCGSVSNMLSSELEVVDWNEIFFFRIDSLDDFVLELIVTDVGKGAPV 641
>At1g71710.1 68414.m08289 inositol polyphosphate 5-phosphatase,
putative similar to inositol polyphosphate 5-phosphatase
I [Arabidopsis thaliana] GI:10444261
Length = 664
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Frame = +1
Query: 172 QATGAFGPKRGG--GFEPQPRPTRQKPMSSDNFLRRFLYARKHDVQQSFELLVRYHQYRR 345
+A PK G + P P R KP + + A + D E+ +
Sbjct: 194 EALNRVRPKLSGVKSYSDPPSPGRFKPFEETHDIIEEEVAFESDSDAGVEIHPIDEEEEE 253
Query: 346 EHDELWA-SADGGVL---RALAD---GLPGVLAQR 429
E D LWA DGGV+ + L D GLP V +R
Sbjct: 254 ETDRLWALKHDGGVIGEVKTLVDPNTGLPVVEIKR 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,310
Number of Sequences: 28952
Number of extensions: 359286
Number of successful extensions: 1123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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