Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00187
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 32 0.51
02_04_0580 + 24065830-24065967,24066163-24067425 29 2.7
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 29 4.7
04_04_0981 + 29912275-29912814 28 6.2
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 8.3
07_03_0512 - 18954515-18955972 28 8.3
05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905... 28 8.3
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 28 8.3
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 8.3
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 544 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 690
T Y +S + LAGHT+D+ E G++L LA L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 329 LIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREV 508
L+K V + G ++FS T+ G + T G ++GA + + +++L I++
Sbjct: 354 LVKRVLRCFGPLEFSVAVTIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSF 413
Query: 509 LKTATSST-MPRSL 547
TA +T PRS+
Sbjct: 414 TATAEIATGSPRSV 427
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 441 PWPKPWTRRSSLPRGFSSSTGKS*KQRPPPR 533
P+PKP RR PRG + + + + PPP+
Sbjct: 353 PFPKPVPRRGGAPRGKAWESFAAAGKEPPPK 383
>04_04_0981 + 29912275-29912814
Length = 179
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 3 INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAALQRVLRPIQGQPR 170
I R + G+ S +G G GRG +++ + RP+ + F+ A RV+ G
Sbjct: 72 IERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKATSDRVVEVDDG--A 128
Query: 171 CSERTEGISLTVFETFLP 224
R+ +S T ET P
Sbjct: 129 ALARSSSVSATAVETRAP 146
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 39 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 191
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>07_03_0512 - 18954515-18955972
Length = 485
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 238 PTGDNGRNVSNTVR---LMPSVRSLQRGCP*IGRNTRCSAADLKSVC 107
P G +G+ + V L +VRSL +GR R AA++K+VC
Sbjct: 408 PLGVDGKRRDSFVEAAELERAVRSLMDDASEVGRKVREKAAEMKAVC 454
>05_03_0162 -
9050981-9051003,9051141-9052273,9052388-9053310,
9053560-9054615
Length = 1044
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 478 REDFLHPQGSPKNSDLLHDAEITQYIEEEFVSQQADTIRSL 600
++ FLH PKN D D + +I E F+ + D + L
Sbjct: 436 KQCFLHYSLLPKNVDFFIDTVTSMWISEGFLHGETDDLEQL 476
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +1
Query: 79 SCYQNVDQGCRRTLSLPH-----CSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSAS 243
S YQ V + + +PH CSA+Y + +HV + + R+ HYL +
Sbjct: 14 SAYQEVKSSPKHAI-VPHNNLLGCSAFYNPVEGHHVQKPHIVPSCKVNFTRASHYLYRSL 72
Query: 244 YFNNTR 261
TR
Sbjct: 73 SERTTR 78
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 514 NSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENN 645
N DL H A+I YI E + ++ GHTSD + F E +
Sbjct: 271 NRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,131,724
Number of Sequences: 37544
Number of extensions: 416413
Number of successful extensions: 1247
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -