Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00187
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18) 36 0.024
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10) 36 0.032
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9) 34 0.13
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 33 0.22
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 31 1.2
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 31 1.2
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41) 29 4.8
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 28 6.4
SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17) 28 6.4
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17) 28 8.4
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +1
Query: 532 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
DA++T +IE F+++Q + I+ LAGH ++LKR
Sbjct: 309 DAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340
>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
Length = 88
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/41 (36%), Positives = 28/41 (68%)
Frame = +1
Query: 529 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 651
+DA++ +IEE F+++Q D+I+ L+ + S L+R E G+
Sbjct: 39 NDAQMQDFIEETFLNEQMDSIKQLSNYVSTLRRLGGEGLGE 79
>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
Length = 155
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 7 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 168
++S+MK L++AC ++ E+D C + D GC + L CS YY Q D H
Sbjct: 46 MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 35.1 bits (77), Expect = 0.056
Identities = 13/39 (33%), Positives = 29/39 (74%)
Frame = +1
Query: 511 KNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
K ++ DA+++ +IE+ F+++Q ++IR L+G+ + LK+
Sbjct: 97 KTAEKNGDAQMSDFIEDHFLTEQVESIRELSGYIAVLKK 135
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 34.3 bits (75), Expect = 0.097
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = +1
Query: 532 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
D+++ ++E ++++Q + I+ LAGH ++LKR
Sbjct: 241 DSQMQDWLESHYLTEQVEAIKELAGHLTNLKR 272
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 34.3 bits (75), Expect = 0.097
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = +1
Query: 532 DAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
D+++ ++E ++++Q + I+ LAGH ++LKR
Sbjct: 256 DSQMQDWLESHYLTEQVEAIKELAGHMTNLKR 287
>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
Length = 117
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 27 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 149
V SH LSG GC G+GR + E++ R +A LQ +LR
Sbjct: 56 VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 19 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 168
MK L++AC ++ E+D C + D GC + L CS YY Q D H
Sbjct: 1 MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +1
Query: 514 NSDLLHDAEITQYIE--------EEFVSQQADTIRSLAGHTSDLKRFITENNG 648
N+ L D +TQ E EE+V + IR + T +KR+IT++NG
Sbjct: 186 NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 509 LKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCL 661
LK + ++ SL TSR+ K R + + +P+TSS S P+T+ KT L
Sbjct: 122 LKRSLKTSPKTSLKTSRKTD--RKKSRNTSPKRSPKTSSKSSPKTSPKTSL 170
>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
Length = 533
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 294 FLKSSRILPCSSGIVEVGGRQEIMVG 217
F RI C S + VGGRQE+ +G
Sbjct: 82 FSAGDRIRRCCSAVGRVGGRQEVFLG 107
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 197 PHCI*NVPTIISCRPPTSTIP 259
PHC PT+I PP+S+IP
Sbjct: 524 PHCYHLYPTVIIYTPPSSSIP 544
>SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 630
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 366 SIFPPLLVTCFMRPMVFSHES---SDNFLKSSRILPCSSGIVE 247
S+F PLL T F R + + +S + +RIL CS+ IV+
Sbjct: 313 SVFNPLLYTFFKRDFMLALKSVVTQKKNVNDTRILSCSTNIVQ 355
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 492 SSTGKS*KQRPPPRCRDHSIHRGGIRESASRYDS*PRGSHLGPQ 623
SS+G + R P R IH GGI ++ S PR +GPQ
Sbjct: 235 SSSGPNGAGRGPAHSRRRQIHNGGIPGTSG---SGPRAQGMGPQ 275
>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
Length = 237
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 302 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 397
+DS ++ +G +K V K GG+ F H K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191
>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
Length = 280
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 18 YEGVCSHRCLSGSGCAGRGRLML 86
+EGVC+H + G G GR+ML
Sbjct: 63 HEGVCNHLSMMAPGKHGTGRVML 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,465,623
Number of Sequences: 59808
Number of extensions: 442756
Number of successful extensions: 1390
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -