Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00187
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.086
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 33 0.20
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 31 0.80
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 2.4
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 2.4
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 2.4
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 29 3.2
U42841-14|AAC48172.3| 469|Caenorhabditis elegans Hypothetical p... 29 4.3
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 5.6
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 5.6
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.086
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 529 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 511 KNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 654
K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 45 KQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 529 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
+DA +T +IEE+++ +Q +I A ++LKR
Sbjct: 121 NDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +1
Query: 439 SPGQSLGHAEAACREDFLHPQGSPKNSDLLHDAEITQYIEEEFVSQQADTIR 594
+P GHAEA +F+ + + + ++++ ++T Y E+E+ + +R
Sbjct: 216 TPHPRQGHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +1
Query: 439 SPGQSLGHAEAACREDFLHPQGSPKNSDLLHDAEITQYIEEEFVSQQADTIR 594
+P GHAEA +F+ + + + ++++ ++T Y E+E+ + +R
Sbjct: 216 TPHPRQGHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +1
Query: 439 SPGQSLGHAEAACREDFLHPQGSPKNSDLLHDAEITQYIEEEFVSQQADTIR 594
+P GHAEA +F+ + + + ++++ ++T Y E+E+ + +R
Sbjct: 216 TPHPRQGHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +3
Query: 72 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 167
GRLML ++ M+T DFKSA L L P+ +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150
>U42841-14|AAC48172.3| 469|Caenorhabditis elegans Hypothetical
protein T17H7.7 protein.
Length = 469
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 239 PPTSTIPDEQGRIRELFRKLSDDSWEKTIGLIKHV-----TKRGGKMDFSSHTT 385
P TSTI E + +LF+KL + S E+T +++ V K KMD SS TT
Sbjct: 179 PTTSTISPEDLEVVQLFKKL-NLSKEETKSIVERVEQVVREKLMSKMDTSSTTT 231
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 553 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 672
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 553 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 672
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,667
Number of Sequences: 27780
Number of extensions: 320382
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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