Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00187
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.18
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 33 0.18
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 31 0.98
At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277... 29 3.0
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 29 3.0
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu... 28 5.2
At5g06220.1 68418.m00694 expressed protein 28 5.2
At1g68670.1 68414.m07846 myb family transcription factor contain... 28 6.9
At5g55860.1 68418.m06963 expressed protein contains Pfam profile... 27 9.1
At4g10430.3 68417.m01715 expressed protein 27 9.1
At4g10430.2 68417.m01713 expressed protein 27 9.1
At4g10430.1 68417.m01714 expressed protein 27 9.1
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing... 27 9.1
At1g33230.1 68414.m04106 expressed protein 27 9.1
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 166 HVVANELKALASLYLKRSYHYLLSASYFNNTRRTGKDSRTLQEIIGRF 309
H V + + + + +YH L Y+N+ R TG+D TL E+ RF
Sbjct: 768 HQVDQSMAKIDTSIKEAAYHAWLG--YYNSVRETGRDKTTLAELANRF 813
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 166 HVVANELKALASLYLKRSYHYLLSASYFNNTRRTGKDSRTLQEIIGRF 309
H V + + + + +YH L Y+N+ R TG+D TL E+ RF
Sbjct: 721 HQVDQSMAKIDTSIKEAAYHAWLG--YYNSVRETGRDKTTLAELANRF 766
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 30.7 bits (66), Expect = 0.98
Identities = 22/51 (43%), Positives = 27/51 (52%)
Frame = +3
Query: 489 SSSTGKS*KQRPPPRCRDHSIHRGGIRESASRYDS*PRGSHLGPQAVHNRE 641
SS TG S K+R RD S RGG R S++ DS H GP+ V R+
Sbjct: 344 SSMTGHS-KERRSSDDRDTSSERGGRRSSSATDDSQESSFH-GPERVRVRQ 392
>At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277:
Protein of unknown function (DUF726)
Length = 672
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 242 PTSTIPDEQGRIRELFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVE 421
P+ + + G +R +FR L DS +GL + K + T L ++ ++ + E
Sbjct: 64 PSLWVHETSGLLRPVFRCLEIDS-PAWLGLEQTACSSPAKHHIGAFTRLLSEEANDASAE 122
Query: 422 VGHEIGALAKALD 460
+ + ALAKA D
Sbjct: 123 MVEQEMALAKAAD 135
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +1
Query: 529 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 627
+D + +IE EF+++Q + I+ ++ + + L+R
Sbjct: 210 NDVHLADFIESEFLTEQVEAIKLISEYVAQLRR 242
>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative similar to
rof1 [Arabidopsis thaliana] GI:1373396
Length = 578
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 305 DSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQ 472
+ WEK L + K +++ T + G +TV+ GH AL+KA+ T K+
Sbjct: 173 EKWEKPKDLDEVYVKYEARLE--DGTIVGKSDGVEFTVKEGHFCPALSKAVKTMKR 226
>At5g06220.1 68418.m00694 expressed protein
Length = 813
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 218 PTIISCRPPTSTIPDEQGRIRELF 289
PT +SC P S IPD GR+ + F
Sbjct: 264 PTKLSCPPFFSVIPDTTGRLMDKF 287
>At1g68670.1 68414.m07846 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 354
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 168 RCSERTEGI-SLTVFETFLPLSPVGLLLQQYQTNREGFANSSGNYRTIRGRKPLVS*STS 344
+CSE+T + VFE F+P+ + L ++ Q E + + +K S
Sbjct: 63 QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKK-----SDW 117
Query: 345 LRGVGRW 365
LR V W
Sbjct: 118 LRSVQLW 124
>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 649
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 431 EIGALAKALDTQKQLAERIFFIHREVLKTAT 523
E G + K LDT KQ +I + E+L+T T
Sbjct: 154 EYGEVCKELDTAKQELRKIRQVSNEILETKT 184
>At4g10430.3 68417.m01715 expressed protein
Length = 347
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQ-QYQTNR 269
AL + I+GQP C ++ G+ L F + + V +LLQ +YQ R
Sbjct: 198 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQR 243
>At4g10430.2 68417.m01713 expressed protein
Length = 271
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQ-QYQTNR 269
AL + I+GQP C ++ G+ L F + + V +LLQ +YQ R
Sbjct: 122 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQR 167
>At4g10430.1 68417.m01714 expressed protein
Length = 347
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQ-QYQTNR 269
AL + I+GQP C ++ G+ L F + + V +LLQ +YQ R
Sbjct: 198 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQR 243
>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
protein low similarity to NUC-2 [Neurospora crassa]
GI:1399532, xenotropic and polytropic murine leukemia
virus receptor [Mus musculus castaneus] GI:6093320;
contains Pfam profile PF03105: SPX domain
Length = 287
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 296 LSDDSWEKTIGLIKHVTK 349
L DDSW+K +G+++ V K
Sbjct: 270 LEDDSWKKKVGVLEQVAK 287
>At1g33230.1 68414.m04106 expressed protein
Length = 347
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 153 IQGQPRCSERTEGISLTVFETFLPLSPVGLLLQ-QYQTNR 269
I+GQP C ++ +G+ L F + + V +LLQ +YQ R
Sbjct: 207 IKGQPNCVQKQKGVRL--FLQWAMMQGVAMLLQNRYQRQR 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,956,057
Number of Sequences: 28952
Number of extensions: 315184
Number of successful extensions: 994
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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