Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00186
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   9.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.0  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 463 SIGTCSLINWCSEVQLFDDFAR 398
           S+  C +++ CS +Q  + FAR
Sbjct: 374 SLPGCHMVDSCSNIQTGEQFAR 395


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 463 SIGTCSLINWCSEVQLFDDFAR 398
           S+  C +++ CS +Q  + FAR
Sbjct: 381 SLPGCHMVDSCSNIQTGEQFAR 402


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 172 LSLARTSPRSTAPQHTPPDGSP 237
           LS   T   S +PQ+TPP G P
Sbjct: 77  LSGDMTHGASISPQNTPPAGYP 98


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 172 LSLARTSPRSTAPQHTPPDGSP 237
           LS   T   S +PQ+TPP G P
Sbjct: 77  LSGDMTHGASISPQNTPPAGYP 98


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 558 WNIYMVLMLRFCKSFYNSGLGL 493
           +N+YMVL+L F    + S +G+
Sbjct: 120 FNLYMVLLLLFDAYLWISSVGV 141


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 57  HINPCGLFIIGGPQSDAG 110
           H+NP    ++GG   D G
Sbjct: 56  HVNPTANHVMGGAVPDVG 73


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 471 EGQDSPGRVPSRCCRMTCKT*ALEPCKYSIS 563
           E +D P   P    R   +T A  PC+ S S
Sbjct: 906 EDEDKPSVSPLTSPRQPAETHAGSPCRNSAS 936


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 277 HHAAPAQAALTSDLATHRAAYAAERSTL 194
           H  +PA  A T    TH A + + R  L
Sbjct: 44  HFNSPAGNAHTGPTGTHDAGFPSPRGAL 71


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 195 KVDRSAAYAARWVAKSLVKAACAGAAW 275
           K+D         V K+L+K    GA W
Sbjct: 158 KIDEHLYPVVALVVKNLIKPTILGADW 184


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 183 CQRKRPRRAPPTRHTCP 133
           C RKRP    P    CP
Sbjct: 18  CVRKRPHSPEPYPPRCP 34


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 398 PGKIVKELNLRAPIYQRTSTYGHFGRAGFPWESPKP 505
           P +    L L  PI QRT++         P +SP+P
Sbjct: 189 PTQGASPLPLLVPIPQRTASTASSASNYSPSQSPEP 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,147
Number of Sequences: 336
Number of extensions: 3725
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)