Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00186
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   116   4e-27
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   7.3  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  116 bits (278), Expect = 4e-27
 Identities = 54/87 (62%), Positives = 62/87 (71%)
 Frame = +3

Query: 3   KVIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXX 182
           K+IK  +PA  LDE+TV HI P G F++GGPQ DAGLTGRKIIVDTY             
Sbjct: 212 KIIKPTVPAHLLDEKTVYHIQPSGRFVVGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSG 271

Query: 183 KDFTKVDRSAAYAARWVAKSLVKAACA 263
           KD++KVDRSAAYAARW+AKSLV A  A
Sbjct: 272 KDYSKVDRSAAYAARWIAKSLVAAGLA 298



 Score =  115 bits (276), Expect = 7e-27
 Identities = 52/85 (61%), Positives = 63/85 (74%)
 Frame = +2

Query: 254 GLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA 433
           GL RRC+VQ++YAIGVAEPLSI V  YGTS KT  +L+ I++KNFDLRPG +VK L L+ 
Sbjct: 296 GLARRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQT 355

Query: 434 PIYQRTSTYGHFGRAGFPWESPKPL 508
           P Y  T++YGHF     PWE PK L
Sbjct: 356 PFYLSTASYGHFTDQSKPWEQPKEL 380


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 352 SATTALHRTKEFRFTTGQNRQRVEPQSTNLSENKYLWTLWKG 477
           SA  A     +  F  G++   ++P S++L   KY+ TL KG
Sbjct: 255 SAIQAFESILQNTFFNGKSNPTIDPNSSSLLSEKYI-TLDKG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,514
Number of Sequences: 5004
Number of extensions: 56003
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)