Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00186
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 106 2e-23
01_02_0051 - 10655867-10657057 104 5e-23
01_03_0090 - 12347165-12348349 103 1e-22
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 4.3
05_05_0130 - 22598744-22599043,22599296-22599307 29 4.3
03_05_0046 + 20235380-20235566,20235760-20235998 29 4.3
01_03_0011 + 11630506-11630853 29 4.3
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 28 5.7
02_03_0356 + 18073794-18074052,18074054-18074163 28 5.7
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 28 7.6
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 28 7.6
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 7.6
>05_01_0264 + 2030080-2031270
Length = 396
Score = 106 bits (254), Expect = 2e-23
Identities = 51/86 (59%), Positives = 58/86 (67%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIP QYLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 217 VIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 276
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACA 263
D TKVDRS AY AR AKS+V + A
Sbjct: 277 DPTKVDRSGAYVARQAAKSIVASGLA 302
Score = 93.5 bits (222), Expect = 1e-19
Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Frame = +2
Query: 227 MGRQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLR 397
+ RQ A+ GL RRC+VQV+YAIGV EPLS+ V YGT +++L IV++NFD R
Sbjct: 288 VARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFR 347
Query: 398 PGKIVKELNLRA---PIYQRTSTYGHFGR--AGFPWESPKPL 508
PG I+ L+L+ Y +T+ YGHFGR F WE KPL
Sbjct: 348 PGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPL 389
>01_02_0051 - 10655867-10657057
Length = 396
Score = 104 bits (250), Expect = 5e-23
Identities = 50/81 (61%), Positives = 56/81 (69%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIP QYLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 217 VIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 276
Query: 186 DFTKVDRSAAYAARWVAKSLV 248
D TKVDRS AY AR AKS+V
Sbjct: 277 DPTKVDRSGAYIARQAAKSIV 297
Score = 90.6 bits (215), Expect = 9e-19
Identities = 50/102 (49%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Frame = +2
Query: 227 MGRQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLR 397
+ RQ A+ GL RRC+VQV+YAIGV EPLS+ V YGT +++L IV +NFD R
Sbjct: 288 IARQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFR 347
Query: 398 PGKIVKELNLRA---PIYQRTSTYGHFGR--AGFPWESPKPL 508
PG I+ L+L Y +T+ YGHFGR F WE KPL
Sbjct: 348 PGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPL 389
>01_03_0090 - 12347165-12348349
Length = 394
Score = 103 bits (248), Expect = 1e-22
Identities = 50/86 (58%), Positives = 58/86 (67%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIP +YLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 216 VIKPVIPDKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 275
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACA 263
D TKVDRS AY AR AKS+V + A
Sbjct: 276 DPTKVDRSGAYIARQAAKSIVASGLA 301
Score = 90.2 bits (214), Expect = 1e-18
Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 7/101 (6%)
Frame = +2
Query: 227 MGRQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLR 397
+ RQ A+ GL RRC+VQV+YAIGV EPLS+ V YGT +++L IV++NFD R
Sbjct: 287 IARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFR 346
Query: 398 PGKIVKELNLR--APIYQRTSTYGHFGR--AGFPWESPKPL 508
PG + L+L+ + +T+ YGHFGR F WE KPL
Sbjct: 347 PGMMTINLDLKRGGNRFIKTAAYGHFGREDPDFTWEVVKPL 387
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 276 CRLLMLLV*LSHYRLQSLIMALHIRLSNNCSPSYKRISIYDRAKSSKS*TSEH 434
C +L+LLV RL+ L + I S+ + Y R+S D AK++ TS +
Sbjct: 690 CFILVLLVFYLKKRLRPLSSKVEIVASSFMNQMYPRVSYSDLAKATNGFTSNN 742
>05_05_0130 - 22598744-22599043,22599296-22599307
Length = 103
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 155 GARRGRFLWQGLHQGRPLRSIRRPMGRQVARQGGLCR 265
GARR R +++G QG I +P+ R++AR+GG+ R
Sbjct: 15 GARRHRIVFRGYIQG-----IAKPVIRRLARKGGVKR 46
>03_05_0046 + 20235380-20235566,20235760-20235998
Length = 141
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 89 RTSVRRGPDGTQNHRGHVWRVGGARRGRFLWQGLHQGRPLRSIRRPMGRQ 238
R S RRG G G RV G G + +G+ +G P R RR +GR+
Sbjct: 57 RGSRRRGGKGGDRATGGAIRVRG---GNGMVRGMREGAPSRWQRRSVGRR 103
>01_03_0011 + 11630506-11630853
Length = 115
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 125 NHRGHVWRVGGARRGR 172
NH G VWR+G ARR R
Sbjct: 17 NHHGSVWRLGRARRHR 32
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = +3
Query: 387 SIYDRAKSSKS*TSE---HQFIREQVPMDTL 470
+I DR++SSKS S+ HQF R+Q+P D +
Sbjct: 59 TILDRSESSKSNNSDDEAHQFWRKQLPDDII 89
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 243 ATWRPIGRRMLRSGRPW*SPCQRKRPRRAPPTRHTCPR*FCVPSGPR 103
AT R + +S SP P R PPTR T P C+ S R
Sbjct: 46 ATLRSLASACSKSKLTGLSPSAGVSPSRCPPTRSTFPNLNCMRSSKR 92
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 387 SIYDRAKSSKS*TSEHQFIREQVPMDT 467
S+YD + TS +QF++E++PM+T
Sbjct: 217 SLYDYKNPRELSTSHNQFLKEKLPMNT 243
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 365 AVVAESYVKCHNQRL*SIMAQLHQ*HKQPAPCSAGTSRLDERLGDPSGGVCCG-AVDL 195
AV E + RL +++H H PAP + +SR + P+GG G A DL
Sbjct: 13 AVSGELSISATQSRLLPSASRVHLPHLLPAPPALSSSRSHPSVPTPTGGGGAGEAADL 70
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 149 VGGARRGRFLWQGLHQGRPLRSIRRPMG 232
+ G++ G ++ L +GR +RSIR P G
Sbjct: 3206 ISGSKDGTCIFHTLREGRYVRSIRHPSG 3233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,684
Number of Sequences: 37544
Number of extensions: 429010
Number of successful extensions: 1204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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