Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00186
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   7e-31
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   2e-29
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   1e-24
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             99   3e-21
SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                30   1.9  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_41712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  130 bits (315), Expect = 7e-31
 Identities = 55/85 (64%), Positives = 73/85 (85%)
 Frame = +2

Query: 254 GLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA 433
           GLC+R +VQ++YAIG+A+PLS+TVF YGTS K++ +LL IV+ NFDLRPGKIVKEL+L+ 
Sbjct: 322 GLCKRVLVQISYAIGIAQPLSVTVFSYGTSKKSEDELLKIVRDNFDLRPGKIVKELDLKK 381

Query: 434 PIYQRTSTYGHFGRAGFPWESPKPL 508
           P+YQ++  YGHF + GF WE+PKPL
Sbjct: 382 PVYQKSCVYGHF-KPGFTWETPKPL 405



 Score =  117 bits (282), Expect = 7e-27
 Identities = 52/82 (63%), Positives = 63/82 (76%)
 Frame = +3

Query: 3   KVIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXX 182
           K++K V+P+++LDE T+ H+ P GLF+IGGPQ DAGLTGRKIIVDTY             
Sbjct: 238 KIVKTVVPSKFLDEDTIFHLQPSGLFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSG 297

Query: 183 KDFTKVDRSAAYAARWVAKSLV 248
           KD+TKVDRSAAYAARW+AKSLV
Sbjct: 298 KDYTKVDRSAAYAARWIAKSLV 319


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  126 bits (303), Expect = 2e-29
 Identities = 55/85 (64%), Positives = 70/85 (82%)
 Frame = +2

Query: 254 GLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA 433
           GLCRR +VQVAYAIG+AEPLSI+VF YG+ + T +QLL +++ NFDLRPG I+++LNL  
Sbjct: 343 GLCRRVLVQVAYAIGIAEPLSISVFSYGSGNYTDKQLLGVIKDNFDLRPGVIIRDLNLLR 402

Query: 434 PIYQRTSTYGHFGRAGFPWESPKPL 508
           PIY+ TST+GHF + GFPWE PK L
Sbjct: 403 PIYKATSTFGHF-KPGFPWEEPKKL 426



 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/83 (59%), Positives = 56/83 (67%)
 Frame = +3

Query: 6   VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
           +I  VIP +YLD++T+ H+ P G FI GGP  DAGLTGRKIIVDTY             K
Sbjct: 260 IINHVIPEKYLDDKTIFHLLPSGQFIDGGPLGDAGLTGRKIIVDTYGGWGAHGGGAFSGK 319

Query: 186 DFTKVDRSAAYAARWVAKSLVKA 254
           D TKVDRS AYA RW+AKSLV A
Sbjct: 320 DVTKVDRSGAYACRWIAKSLVAA 342


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  110 bits (264), Expect = 1e-24
 Identities = 52/83 (62%), Positives = 60/83 (72%)
 Frame = +3

Query: 6   VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
           V+KEV+P +Y+D  TV H+ P G F+IGGPQ DAGLTGRKIIVDTY             K
Sbjct: 170 VVKEVVPEKYIDNDTVYHMQPSGSFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGK 229

Query: 186 DFTKVDRSAAYAARWVAKSLVKA 254
           D +KVDRSAAYAARW+AKSLV A
Sbjct: 230 DPSKVDRSAAYAARWIAKSLVAA 252



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 32/53 (60%), Positives = 45/53 (84%)
 Frame = +2

Query: 257 LCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVK 415
           LC R +VQ++YAIGVAEPLSI+VF YGT ++ +++LL +++ NFDLRPG IV+
Sbjct: 254 LCHRVLVQLSYAIGVAEPLSISVFTYGTGYRPEEELLEVIKHNFDLRPGVIVR 306


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 49/86 (56%), Positives = 59/86 (68%)
 Frame = +3

Query: 6   VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
           +IK V+PA++L E T+ HINP G F+IGGP  DAGLTGRKIIVDTY             K
Sbjct: 101 IIKPVLPAEWLHEGTLYHINPTGNFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGK 160

Query: 186 DFTKVDRSAAYAARWVAKSLVKAACA 263
           D +KVDRSAAY  R+VAK++V A  A
Sbjct: 161 DPSKVDRSAAYIGRYVAKNIVAAELA 186


>SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 392 LRPGKIVKELNLRAPIYQRTSTYGHFGR 475
           +RP  I + L LR+P+Y  T+ YGH GR
Sbjct: 1   MRPAAIERRLKLRSPMYSETAAYGHMGR 28


>SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 168

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 341 SHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGFPWES 496
           +H   Q L+        LR G   KE     P YQ  + YG   R+GFP+ S
Sbjct: 9   THPAAQTLVQASGALKCLRVGHWAKECRSAWPGYQSYAGYGFQNRSGFPYSS 60


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 459  MDTLEGQDSPGRVPSRCCRMTCKT*ALEPCKYSISI**TLMYVCHCSQ 602
            M+ L   D P + P+   R  C T    PCKY   I  T    C C+Q
Sbjct: 1181 MEPLSEVD-PTQFPTTTGRPLCPTMTCAPCKYGYVIDRTGCQTCQCAQ 1227


>SB_41712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 278 QVAYAIGVAEPLSITVFDYGTSHKTQQQLLS 370
           +V + IG  E    +VFDYGT + T ++  S
Sbjct: 154 RVNHGIGATEANEASVFDYGTVYSTMERYSS 184


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = -2

Query: 562 LMEYLHGSNAQVLQVILQQRLGTLPGESCPSKVSIGTCSLINWCSEVQLFD 410
           L+  +HG+ ++ + ++ ++++     +  P      T    NW  E+ +FD
Sbjct: 756 LIGTIHGTTSRYITILSEEKVEKRKHDRIPENTKTSTGYTPNWTEEIFIFD 806


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 140 VWRVGGARRGRFLWQGLHQGRPLRSIRR 223
           VW   G  RGRF   G HQ   ++  RR
Sbjct: 621 VWLASGIMRGRFSDNGFHQTEKVKKRRR 648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,744,376
Number of Sequences: 59808
Number of extensions: 478893
Number of successful extensions: 1301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)