Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00186
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati... 103 1e-22
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati... 102 2e-22
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1... 101 4e-22
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1... 101 4e-22
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2... 99 1e-21
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5... 30 1.2
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 28 6.3
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 28 6.3
At3g45670.1 68416.m04935 protein kinase-related contains eukaryo... 27 8.4
>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 3 (Methionine
adenosyltransferase 3, AdoMet synthetase 3)
[Lycopersicon esculentum] SWISS-PROT:P43282
Length = 390
Score = 103 bits (247), Expect = 1e-22
Identities = 50/86 (58%), Positives = 57/86 (66%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIPA+YLD+ T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 214 VIKPVIPAKYLDDNTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 273
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACA 263
D TKVDRS AY R AKS+V A A
Sbjct: 274 DPTKVDRSGAYIVRQAAKSVVAAGLA 299
Score = 81.8 bits (193), Expect = 4e-16
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Frame = +2
Query: 233 RQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPG 403
RQ A+ GL RRC+VQV+YAIGV EPLS+ V Y T + +L ++++ FD RPG
Sbjct: 287 RQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPG 346
Query: 404 KIVKELNLRAP---IYQRTSTYGHFGR--AGFPWESPKPL 508
+ L+L+ +Q+T+ YGHFGR F WE KPL
Sbjct: 347 MMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPL 386
>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 2 (Methionine
adenosyltransferase 2, AdoMet synthetase 2)
[Catharanthus roseus] SWISS-PROT:Q96552
Length = 393
Score = 102 bits (245), Expect = 2e-22
Identities = 49/86 (56%), Positives = 57/86 (66%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIP +YLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 214 VIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 273
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACA 263
D TKVDRS AY R AKS+V + A
Sbjct: 274 DPTKVDRSGAYIVRQAAKSIVASGLA 299
Score = 87.4 bits (207), Expect = 7e-18
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 8/106 (7%)
Frame = +2
Query: 233 RQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPG 403
RQ A+ GL RR +VQV+YAIGV EPLS+ V YGT +++L IV+++FD RPG
Sbjct: 287 RQAAKSIVASGLARRVIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPG 346
Query: 404 KIVKELNLRA---PIYQRTSTYGHFGR--AGFPWESPKPLL*NDLQ 526
I L+L+ + +T+ YGHFGR A F WE KPL N +Q
Sbjct: 347 MISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQ 392
>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 101 bits (242), Expect = 4e-22
Identities = 50/89 (56%), Positives = 57/89 (64%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIP +YLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 214 VIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 273
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACAGAA 272
D TKVDRS AY R AKS+V A A
Sbjct: 274 DPTKVDRSGAYIVRQAAKSVVANGMARRA 302
Score = 78.6 bits (185), Expect = 3e-15
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Frame = +2
Query: 233 RQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPG 403
RQ A+ G+ RR +VQV+YAIGV EPLS+ V Y T +++L IV+++FD RPG
Sbjct: 287 RQAAKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPG 346
Query: 404 KIVKELNLRA---PIYQRTSTYGHFGR--AGFPWESPKPL 508
+ L+L+ + +T+ YGHFGR F WE KPL
Sbjct: 347 MMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 386
>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 101 bits (242), Expect = 4e-22
Identities = 50/89 (56%), Positives = 57/89 (64%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK VIP +YLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 214 VIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 273
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACAGAA 272
D TKVDRS AY R AKS+V A A
Sbjct: 274 DPTKVDRSGAYIVRQAAKSVVANGMARRA 302
Score = 78.6 bits (185), Expect = 3e-15
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Frame = +2
Query: 233 RQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPG 403
RQ A+ G+ RR +VQV+YAIGV EPLS+ V Y T +++L IV+++FD RPG
Sbjct: 287 RQAAKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPG 346
Query: 404 KIVKELNLRA---PIYQRTSTYGHFGR--AGFPWESPKPL 508
+ L+L+ + +T+ YGHFGR F WE KPL
Sbjct: 347 MMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 386
>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
identical to S-adenosylmethionine synthetase 2
(Methionine adenosyltransferase 2, AdoMet synthetase 2)
[Arabidopsis thaliana] SWISS-PROT:P17562
Length = 393
Score = 99 bits (238), Expect = 1e-21
Identities = 48/89 (53%), Positives = 57/89 (64%)
Frame = +3
Query: 6 VIKEVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXK 185
VIK +IP +YLD++T+ H+NP G F+IGGP DAGLTGRKII+DTY K
Sbjct: 214 VIKPIIPEKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK 273
Query: 186 DFTKVDRSAAYAARWVAKSLVKAACAGAA 272
D TKVDRS AY R AKS+V A A
Sbjct: 274 DPTKVDRSGAYIVRQAAKSVVANGMARRA 302
Score = 84.2 bits (199), Expect = 7e-17
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 8/100 (8%)
Frame = +2
Query: 233 RQVARQ---GGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPG 403
RQ A+ G+ RR +VQV+YAIGV EPLS+ V YGT +++L IV++ FD RPG
Sbjct: 287 RQAAKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKETFDFRPG 346
Query: 404 KIVKELNLRA---PIYQRTSTYGHFGR--AGFPWESPKPL 508
+ L+L+ +Q+T+ YGHFGR F WE KPL
Sbjct: 347 MMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPL 386
>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
contains Pfam profile: PF00249 myb-like DNA binding
domain; identical to cDNA putative c-myb-like
transcription factor MYB3R-5 (MYB3R5) GI:15375300
Length = 548
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 582 YVCHCSQGAASPVSLFRL*CD 644
Y C CS GAASPVSL C+
Sbjct: 382 YECGCSPGAASPVSLMTTPCN 402
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Frame = +2
Query: 116 GTQNHRGHVWRVGGARRGRFLWQGLH---QGRPLRSIRRPMGRQVARQGG----LCRRC 271
G + RGH GG RG F QG H +GR R GR + + G +C RC
Sbjct: 223 GNPHGRGHGRGRGGRGRGNFYGQGNHYGGRGRGNYGRSRGRGRGINKPRGKAKSVCYRC 281
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 149 VGGARRGRFLWQGLHQGRPLRSIRRPMGRQVAR 247
+ G++ G ++ L +GR +RS++ P G V++
Sbjct: 1127 ISGSKDGTCVFHTLREGRYIRSLKHPSGSAVSK 1159
>At3g45670.1 68416.m04935 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 379
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Frame = +2
Query: 179 WQGLHQGRPLRSIRRPM-----GRQVARQG 253
W +H+GR LRS++ P G ++AR+G
Sbjct: 136 WSLMHEGRILRSLQSPFVIRCYGHEIAREG 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,432
Number of Sequences: 28952
Number of extensions: 313535
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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