Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00184
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865... 48 8e-06
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301... 46 4e-05
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511... 33 0.31
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 32 0.54
08_02_1049 + 23944526-23945473 30 1.6
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 30 2.2
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 29 2.9
08_02_0017 - 11264038-11264260,11264376-11264653 29 2.9
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 29 2.9
07_03_0126 - 13797395-13797451,13797590-13797707,13797802-13798004 29 3.8
02_01_0091 + 646299-649082 29 5.0
11_01_0710 - 5830475-5830595,5831498-5834124 28 6.6
04_01_0106 + 1102880-1105691,1105781-1105806 28 6.6
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 28 6.6
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373... 28 6.6
04_04_0756 - 27817846-27819224,27819961-27820093,27820440-278205... 28 8.7
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 28 8.7
>03_02_0460 -
8654283-8654302,8654669-8654847,8654940-8655125,
8655626-8655781,8656223-8656431,8657254-8657358
Length = 284
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 493 RQALHLVKFCENCWRCSFYLYNFSYGMFILWEKTWLWDIDQCYIGYPHQGVTGDVWWYYM 672
RQA +VKF E+ W+ ++Y ++ + I+ ++ W D Q + G+P+Q +T + +YM
Sbjct: 55 RQA-KIVKFSESIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYM 113
Query: 673 ISSAFY-WSLTISQFWDVKR 729
FY +S+ W+ +R
Sbjct: 114 CQCGFYIYSIFALVAWETRR 133
>02_05_0608 +
30329174-30329362,30329681-30329907,30330035-30330190,
30330893-30331078,30331184-30331368,30331571-30331602
Length = 324
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Frame = +1
Query: 430 WRTSGLIGETGGKMVAFTSQPRQALHLVKFCENCWRCSFYLYNFSYGMFILWEKTWLWDI 609
W LI E K+ T R + + KF E+ W+C ++L + + ++++W
Sbjct: 64 WLARRLIFEKDEKLDLATHAGR--IKIRKFKESAWKCIYFLSAELLALSVTYKESWFTST 121
Query: 610 DQCYIG-----YPHQGVTGDVWWYYMISSAFY-WSLTISQFWDVKR 729
++G +P Q + + YM ++ FY +S+ QFW++KR
Sbjct: 122 KNFWVGPGDQVWPDQRIKFKLKLVYMYAAGFYTYSIFALQFWEIKR 167
>10_02_0086 -
5112095-5112185,5112487-5112599,5113325-5113431,
5113782-5113860,5114000-5114089,5114628-5114882,
5117025-5117174,5117634-5117933
Length = 394
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 217 VIYNDYRHLFYPFRWRWCL*FYGMYWRSTGL 309
V+Y D + F P+RW+WCL + WR L
Sbjct: 313 VVYKD-PNTFNPWRWKWCLQGFHGLWRGAAL 342
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 334 IPIDFPNGANQY-FSSTCRKTISTNASGTDKKDAGSHCKS 218
+ +D+P G Y SS+C T+ST+ S TD +GS+ S
Sbjct: 35 LELDYPGGDGSYTVSSSCSSTVSTSGSCTD-SSSGSYTDS 73
>08_02_1049 + 23944526-23945473
Length = 315
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 434 EQVDLSERQVERWWRLRRSQDKPSTWSSSARTVGDAASICTTS 562
E + L + ERW RLRR Q K W A D A+ C S
Sbjct: 33 ETMHLLDAYEERWTRLRRGQLKAQQWEEVA---ADVAARCAAS 72
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 434 EQVDLSERQVERW-WRLRRSQDKPSTWSSSARTVGDAASICTTSRTVCSYYGRKLGCGIS 610
E D+ R + + WRL + ++ SS+ + C + VCSY R+L I
Sbjct: 723 ENSDIGWRDLTKSKWRLAKGDEQLDFTYSSSEVPHHVSDECLSELAVCSYKARRLPKNIL 782
Query: 611 TSATLAI 631
SA ++
Sbjct: 783 RSAVRSV 789
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 591 FLP*YEHTVREVVQIEAASPTVLAELDQVEGLSWLRRK 478
F P +++ V + EA T LAE Q+EG+S LR K
Sbjct: 394 FAPKRYYSIDRVFRNEAVDRTHLAEFHQIEGMSKLRFK 431
>08_02_0017 - 11264038-11264260,11264376-11264653
Length = 166
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 449 SERQVERWWRLRRSQDKPSTWSSSARTVGDAA 544
S+ Q+ RWW + R D+ + +TVG+ A
Sbjct: 32 SKEQMARWWLIPREDDEVGSGGVDGQTVGEPA 63
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 414 KQICALANKWTYRRDRWKDGGVYVAAKT 497
K+I L N+ + RRDR+K G + AAKT
Sbjct: 121 KRIRRLVNETSARRDRYKVGTIVAAAKT 148
>07_03_0126 - 13797395-13797451,13797590-13797707,13797802-13798004
Length = 125
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 434 EQVDLSERQVERWWRLRRSQDKPSTW 511
+++ + ERQV+ W++ RR++ K +TW
Sbjct: 86 KKLGMEERQVKFWFQNRRTRKKVATW 111
>02_01_0091 + 646299-649082
Length = 927
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 393 ASSKLKHKQICALANKWTYRRDRWKDGG---VYVAAKTSPPPGQVL 521
A S H + N W R+ W DGG +Y T+P P + L
Sbjct: 80 AKSAPPHPPSSSAPNPWRKRKFSWHDGGGEDIYAKKPTNPAPPRPL 125
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 470 WWRLRRSQDKPSTWSSSARTVGDAASICTTSRTVCSY 580
WW++ + S+W S T G ++S C+ + V +
Sbjct: 643 WWKIEGGESVISSWGGSVHT-GTSSSSCSVTNLVVKF 678
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 76 CSGGSSLLIFNNLMN-TLRLLLDTFWDESVWLPPNTTWEDLEPGPDKVVI 222
CS G +L + L T ++LD WD +VW + DL KVVI
Sbjct: 263 CSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLE-PFLDLNSRGSKVVI 311
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = +1
Query: 553 YNFSYGMFILWEKTWLWDIDQCYIGYPHQGV-TGDV----WW 663
Y ++ +W+ W + C I YP+ GV GDV WW
Sbjct: 627 YPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWW 668
>02_04_0350 +
22234632-22235145,22235277-22236209,22237253-22237340,
22237859-22237865
Length = 513
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 515 SSARTVGDAASICTTSRTVCSYYGRKLGCGISTSATLAIPIRA*PVTC 658
S A D ASIC ++ T C + KL + S IP PVTC
Sbjct: 78 SDADATQDPASICYSTMTTCLPHFTKLLVDLDGSRAAGIP----PVTC 121
>04_04_0756 -
27817846-27819224,27819961-27820093,27820440-27820519,
27821378-27821609
Length = 607
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 461 VERWWRLRRSQDKPSTWSSSARTVGDAASICTTSRTVCSY--YGRKLGCGISTSATLAI 631
V + WR RS TW S +A + TT+R Y ++ CGI ++ L I
Sbjct: 114 VHKAWRSARSNVCAPTWLSHIPRAWEAGQLSTTAREKWWYDTQWSRVDCGILFASRLCI 172
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 544 FYLYNFSYGMFILWEKTWLWDIDQCYIGYPHQGVTGDVWWYYMISSAFY--WSLTISQ 711
FYL FS G I+W + L I G G G+ WW + S+ + W+ + Q
Sbjct: 133 FYLMGFSMGGEIMW--SCLKHISHRLAGVAILGPVGNYWWSGLPSNVSWHAWNQQLPQ 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,558,654
Number of Sequences: 37544
Number of extensions: 523335
Number of successful extensions: 1309
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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