Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00184
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55863| Best HMM Match : Homeobox (HMM E-Value=0.013)                48   1e-05
SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)             28   6.7  
SB_10402| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6)              28   6.7  
SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)                   28   8.9  
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)                    28   8.9  

>SB_55863| Best HMM Match : Homeobox (HMM E-Value=0.013)
          Length = 229

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
 Frame = +3

Query: 243 FLSVPLALVLIVLRHVLEKYWFAPFGKSIGIKNTRPKKAPNNPKLENAYQASSKLKHKQI 422
           +L +P+A+VLI+LR + E +   P  K +G+K  +P K   +   E  Y+ S K   +QI
Sbjct: 46  YLCIPVAVVLIILRIIFENFIARPIVKFLGVKEKKPVKIRESDLCEQVYRKSRKPNKEQI 105

Query: 423 CALANK--W-TYRRDRW 464
             L+++  W T   ++W
Sbjct: 106 QDLSSRLGWSTQEVEKW 122



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 145 FWDESVWLPPNTTWEDLE 198
           FW E +WLP  T WE ++
Sbjct: 15  FWSERIWLPEITNWEKVK 32


>SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 485 DVNATIFPPVSPISPLVRQCTYLFMFQFGRCLICIF 378
           D N  I P V+P+SP +  C  LF   +    +C F
Sbjct: 176 DENLGILPGVAPLSPSMAACNSLFRLTYLDATLCTF 211


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +3

Query: 297  KYWFAPFGKSIGIKNTRPKKAPNNPKLENAYQASSKLKHKQICALANKWTYRRDRWKDGG 476
            + W  P  KS+     RP     +P ++     +SK KHK    +     +  +RW    
Sbjct: 895  RLWHLPSAKSVPSTPVRPYDITESP-IKALKNLASKSKHKPESTVDCPLMFDDNRWHPFR 953

Query: 477  VYVAAKTSPPPGQV 518
                 +T P PG +
Sbjct: 954  HSAQQETKPKPGNM 967


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 333  IKNTRPKKAPNNPKLENAYQASSKLKHKQICALANKWTYR 452
            I +TR +K      LEN YQ+  KL+H+   AL  +  Y+
Sbjct: 1015 IDDTRQQKTNLADALENVYQSKEKLQHRLDEALCKQDQYK 1054


>SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 575 NIPYEKLYK*KLHLQQFSQNLTRWRACL----GCDVNATIFP 462
           N+P   LY+ K  +Q F+  L  W A      GC+++ T FP
Sbjct: 5   NVPAGTLYQFKTKVQLFNDGLCVWYAPTIIQSGCNIDITYFP 46


>SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 631 PHQGVTGDVWWYYMISSAFYWSLTI 705
           PH G T    W+YM +  FY S T+
Sbjct: 318 PHNGFTCPAQWFYMSAQWFYMSRTM 342



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 631 PHQGVTGDVWWYYMISSAFYWSLTI 705
           PH G T    W+YM +  FY S T+
Sbjct: 411 PHNGFTCPAQWFYMSAQWFYMSRTM 435


>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
          Length = 839

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 369 PKLENAYQASSKLKHKQICALANKWTYRRDRWKDGGVYVAAKTS 500
           P  +NA + + K   + ICA     ++ RD+ K GGV V  K S
Sbjct: 214 PVCDNAVKCNQK---RYICATCKDTSHARDKKKGGGVGVYVKES 254


>SB_10402| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6)
          Length = 364

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -1

Query: 705 DGQRPIEGGRYHVVPPHVTGHALMGIANVALVDIPQP--SFLP*YEHTVREVVQIEAASP 532
           D QR +E GR H V  H+    + G     L  IP P  S L   ++T    +     S 
Sbjct: 78  DQQRMLERGRVHTVTTHMHLTYVGGFDTCGLSGIPDPGMSTLQTVQYTAFSPLGFSVMS- 136

Query: 531 TVLAELDQVEGLS 493
             LA+ D + GL+
Sbjct: 137 MHLAKTDLIRGLT 149


>SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)
          Length = 471

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 446 LSERQVERWWRLRRSQDKPSTWSSSARTVGDAASICTTSRTVCSYYGRKLGCGISTSAT 622
           +++R+ + W  + R  D  S W  S R V +  S C      CS +    GCG+ +  T
Sbjct: 78  MAKRERDTWRAMGRDLDDYSRWYQSKRAV-EGCSTC------CSTWWALAGCGMKSVET 129


>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 517 FCENCWRCS-FYLYNFSYGM 573
           F E+CWRC  FYLY    G+
Sbjct: 774 FDEHCWRCGVFYLYKCPLGV 793


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 324 SIGIKNTRPKKAPNNPKLENAYQASSKLKHKQICALANKWTYRRDRWKD 470
           S+ +  ++ + AP NP ++   Q + +      C+ +    Y RDR +D
Sbjct: 56  SVSLVYSQARDAPANPTIKPNQQTTPRAMWSSPCSTSRTKGYERDRHRD 104


>SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 570 TVREVVQIEAASPTVLAELDQVEGLSWLRRKRHHLSTCLSD 448
           T+++VV+ E  + T  A+    + L WLRR  H +   L +
Sbjct: 122 TLQDVVEKEIENKTTKAKNSGTDALLWLRRALHFIIAFLKE 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,523,427
Number of Sequences: 59808
Number of extensions: 589683
Number of successful extensions: 1529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)