Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00184
         (729 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    31   0.048
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    29   0.11 
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     28   0.26 
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    25   3.2  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    24   4.2  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    24   4.2  
AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription fact...    24   5.5  
AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           23   7.3  
AF444782-1|AAL37903.1|  576|Anopheles gambiae Toll9 protein.           23   7.3  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   9.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   9.7  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    23   9.7  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 0.048
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 336 KNTRPKKAPNNPKLENAYQASSKLKHKQICALANKWTYRR----DRWKDGGVYVAAKTSP 503
           ++  PKKAP +  + N   A++ L   ++ A + K         D WK   + +  K+  
Sbjct: 423 RSLNPKKAPGDDNIPNMAAAAAILAFPEVFAKSYKQLLEAGTFPDAWKRQQLVLLTKSGK 482

Query: 504 PPGQ 515
           PPG+
Sbjct: 483 PPGE 486


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 434 EQVDLSERQVERWWRLRRSQDKPSTWSSSARTVG 535
           + + LSERQV+ W++ RR++D+     +   +VG
Sbjct: 250 QNLQLSERQVKIWFQNRRAKDRKQKKKAETGSVG 283


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = +2

Query: 290 TGEVLVCTVWKINRY*KYQTEESTKQS*IRKCISSIVQTET*TDMCTGEQVDLSERQVER 469
           TG V V    K   Y K+QT E  K+      +S   + E          ++L+ERQV+ 
Sbjct: 265 TGNVTVRK--KRKPYSKFQTLELEKEFLFNAYVSKQKRWEL------ARNLNLTERQVKI 316

Query: 470 WWRLRRSQDKPSTWSSSAR 526
           W++ RR ++K ++   SA+
Sbjct: 317 WFQNRRMKNKKNSQRQSAQ 335


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 332 Y*KYQTEESTKQS*IRKCISSIVQTET*TDMCTGEQVDLSERQVERWWRLRRSQDKPSTW 511
           Y +YQT E  K+    + ++   + E    +C      L+ERQ++ W++ RR +     W
Sbjct: 251 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALC------LTERQIKIWFQNRRMK-----W 299

Query: 512 SSSARTVGDAAS 547
               +T G+  S
Sbjct: 300 KKENKTKGEPGS 311


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 437 QVDLSERQVERWWRLRRSQ 493
           +VDL E +VE W++ RR++
Sbjct: 223 KVDLKEERVEVWFKNRRAK 241


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 446 LSERQVERWWRLRRSQDKPSTWSSSART 529
           L+ERQ++ W++ RR + K    S+SA T
Sbjct: 45  LTERQIKIWFQNRRMKAKKDN-SASANT 71


>AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription factor
           proboscipedia protein.
          Length = 76

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 440 VDLSERQVERWWRLRR 487
           +DL+ERQV+ W++ RR
Sbjct: 61  LDLTERQVKVWFQNRR 76


>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 169 PPNTTWEDLEPGP 207
           P  TTW DL P P
Sbjct: 235 PTTTTWSDLPPPP 247


>AF444782-1|AAL37903.1|  576|Anopheles gambiae Toll9 protein.
          Length = 576

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 241 LFYPFRWRWCL*FYGMYWRSTGLHRLENQ*VLKIPDRRKHQTI 369
           +FYP R    L    M  R TG  R+EN  +  I     HQ I
Sbjct: 36  IFYPLRSLLHLDLSNMDTRRTGEERIENPFMKLIAGVDLHQDI 78


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 304  QYFSSTCRKTISTNASGTDKKDAGS 230
            QY  S C      ++SG D   AGS
Sbjct: 1250 QYIRSACSNHYGDHSSGKDPTGAGS 1274


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 91  SLLIFNNLMNTLRLLLDTFWDESVWLPPNTTWEDLEPG 204
           S LI  NL N  +++    W E  W      WE  E G
Sbjct: 58  SQLIDVNLKN--QIMTTNLWVEQTWYDYKLKWEPKEYG 93


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 446 LSERQVERWWRLRRSQDKPSTWSSSARTVGDAAS 547
           LSE+QV+ W++ RR + K       A   G  +S
Sbjct: 235 LSEKQVKIWFQNRRVKRKKGDAPFGAELSGGVSS 268


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 860,244
Number of Sequences: 2352
Number of extensions: 20256
Number of successful extensions: 63
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)