Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00184
(729 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 25 0.97
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.9
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 23 3.9
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 22 5.2
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 22 5.2
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.8
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 6.8
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 21 9.0
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 24.6 bits (51), Expect = 0.97
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 332 Y*KYQTEESTKQS*IRKCISSIVQTET*TDMCTGEQVDLSERQVERWWRLRRSQDKPSTW 511
Y +YQT E K+ + ++ + E +C L+ERQ++ W++ RR + K
Sbjct: 277 YTRYQTLELEKEFHYNRYLTRRRRIEIAHALC------LTERQIKIWFQNRRMKWKKENK 330
Query: 512 SSSARTVGD 538
S GD
Sbjct: 331 SKGTPGSGD 339
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 1.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 394 HRPN*NINRYVHWRTSGLIGETGGKMVA 477
H PN INR VH TS GG+ +A
Sbjct: 401 HHPNCKINRKVHHTTSS-SSAAGGEGLA 427
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/45 (17%), Positives = 19/45 (42%)
Frame = +1
Query: 70 VHCSGGSSLLIFNNLMNTLRLLLDTFWDESVWLPPNTTWEDLEPG 204
VH + G + + N+ +++ W +W W++ + G
Sbjct: 52 VHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 2.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 91 SLLIFNNLMNTLRLLLDTFWDESVWLPPNTTWEDLEPGPDKVV 219
S LI NL N +++ W E W WE E G K++
Sbjct: 63 SQLIDVNLKN--QIMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 2.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 91 SLLIFNNLMNTLRLLLDTFWDESVWLPPNTTWEDLEPGPDKVV 219
S LI NL N +++ W E W WE E G K++
Sbjct: 63 SQLIDVNLKN--QIMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 22.6 bits (46), Expect = 3.9
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 332 Y*KYQTEESTKQS*IRKCISSIVQTET*TDMCTGEQVDLSERQVERWWRLRRSQDK 499
Y +YQT E K+ + ++ + E +C L+ERQ++ W++ RR + K
Sbjct: 15 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALC------LTERQIKIWFQNRRMKWK 64
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 22.2 bits (45), Expect = 5.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 332 Y*KYQTEESTKQS*IRKCISSIVQTET*TDMCTGEQVDLSERQVERWWRLRRSQDK 499
Y +YQT E K+ + ++ + E +C L+ERQ++ W++ RR + K
Sbjct: 15 YTRYQTLELEKEFHYNRYLTRRRRIEIAHALC------LTERQIKIWFQNRRMKWK 64
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.2 bits (45), Expect = 5.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 348 PKKAPNNPKLENAYQASSKLK 410
PKK NP+ +NA A ++LK
Sbjct: 25 PKKRNKNPQPKNAVCALNELK 45
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 490 PRQALHL-VKFCENCWRCSFYLYN 558
P ++L L +K E WR Y YN
Sbjct: 103 PIKSLSLSIKMLERIWRPDTYFYN 126
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.8 bits (44), Expect = 6.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 303 WFAPFGKSIGIKNTRPKKAPNNPKLENAYQASSKLKHKQI 422
W+ P + I N R +K + ++ A+ K KH+ I
Sbjct: 596 WYVPSLDQVWILNWRNQKDIDVKTVQVIEDAAQKKKHRAI 635
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 21.4 bits (43), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 333 IKNTRPKKAPNNPKLENAYQASSKL 407
IKNTR K+ N +N Y+ + L
Sbjct: 412 IKNTRCAKSNNQNNNQNKYKNQAHL 436
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,363
Number of Sequences: 438
Number of extensions: 5565
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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