Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00184
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19260.1 68416.m02443 longevity-assurance (LAG1) family prote...    44   1e-04
At3g25540.1 68416.m03175 longevity-assurance (LAG1) family prote...    38   0.007
At1g13580.1 68414.m01592 longevity-assurance (LAG1) family prote...    36   0.021
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    31   0.78 
At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr...    29   3.2  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    29   4.2  
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    28   7.3  
At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein sim...    28   7.3  
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop...    28   7.3  
At4g39280.1 68417.m05563 phenylalanyl-tRNA synthetase, putative ...    27   9.6  

>At3g19260.1 68416.m02443 longevity-assurance (LAG1) family protein
           similar to Alternaria stem canker resistance protein
           (ASC1) [Lycopersicon esculentum] GI:7688742; contains
           Pfam profile PF03798: Longevity-assurance protein (LAG1)
          Length = 296

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
 Frame = +1

Query: 412 INRYVHWRTSGLIGETGGKMVAFTSQPRQALHLVKFCENCWRCSFYLYNFSYGMFILWEK 591
           ++RYV  R +  +  TG   +       +A  +VK  E+ W+  +Y     + + +++ +
Sbjct: 39  LDRYVFQRIALWLLSTGSAPIKLNDAATRA-KIVKCKESLWKLLYYAACDFFVLQVIYHE 97

Query: 592 TWLWDIDQCYIGYPHQGVTGDVWWYYMISSAFY-WSLTISQFWDVKR 729
            W  DI   + G+P+Q +   +  YYM    FY + +     W+ +R
Sbjct: 98  PWARDIKLYFHGWPNQELKLSIKLYYMCQCGFYVYGVAALLAWETRR 144


>At3g25540.1 68416.m03175 longevity-assurance (LAG1) family protein
           similar to Alternaria stem canker resistance protein
           (ASC1) [Lycopersicon esculentum] GI:7688742; contains
           Pfam profile PF03798: Longevity-assurance protein
           (LAG1); supporting cDNA
           gi|7658238|gb|AF198179.1|AF198179
          Length = 310

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
 Frame = +1

Query: 514 KFCENCWRCSFYLYNFSYGMFILWEKTWLWDIDQCYIG-----YPHQGVTGDVWWYYMIS 678
           KF E+ W+C +YL      + + + + W  +    +IG     +P Q +   + + YM +
Sbjct: 77  KFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLKFLYMFA 136

Query: 679 SAFY-WSLTISQFWDVKR 729
           + FY +S+    FW+ +R
Sbjct: 137 AGFYTYSIFALVFWETRR 154


>At1g13580.1 68414.m01592 longevity-assurance (LAG1) family protein
           similar to Alternaria stem canker resistance protein
           (ASC1) [Lycopersicon esculentum] GI:7688742; contains
           Pfam profile PF03798: Longevity-assurance protein (LAG1)
          Length = 239

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +1

Query: 514 KFCENCWRCSFYLYNFSYGMFILWEKTWLWDIDQCYIG-----YPHQGVTGDVWWYYMIS 678
           KF E+ W+C +YL      + + + + W  +    ++G     +P Q     +   YM  
Sbjct: 74  KFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFV 133

Query: 679 SAFY-WSLTISQFWDVKR 729
           + FY +S+    FW+ +R
Sbjct: 134 AGFYTYSIFALVFWETRR 151


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 437 VRQCTYLFMFQFGRCLICIF*FRIVWCFLR 348
           +R   + FMF F   L+CI+ F   W ++R
Sbjct: 188 MRNYRFFFMFVFSTTLLCIYVFAFCWVYIR 217


>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 392

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 583 WEKTWLWDIDQCYIGYPHQGVTGDVWWYYMISSAFYWSLTISQFW-DVK 726
           WE+   WD+D  ++ Y +  V   +++YY     F W  T+++ W D+K
Sbjct: 264 WERM-KWDMDIGWVWYSYCVVENVLYYYY--KGVFKWYDTMARLWRDLK 309


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 434 EQVDLSERQVERWWRLRRSQDK 499
           E++DLS+RQ++ W+  RR +DK
Sbjct: 72  EKLDLSDRQLQMWFCHRRLKDK 93


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 471 GGVYVAAKTSPPPGQVLRXXXXXXXXXXXXXXRYVHTMGENL 596
           GG  V  K SPPPG V                + +H  G++L
Sbjct: 233 GGAMVLGKISPPPGMVFSHSDPFRSPYYNIDLKQMHVAGKSL 274


>At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein
           similar to cellulase GI:575404 from [Sambucus nigra].
          Length = 486

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 538 CSFYLYNFSYGMFILWEKTWLWDI--DQCYIGY 630
           C FY  N  Y   ++W  TWL+    +  Y+ Y
Sbjct: 229 CPFYCSNSGYNDELIWAATWLYKATRNHLYLSY 261


>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 467

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 363 NNPKLENAYQASSKLKHKQICALANKWT 446
           ++  +   Y+ SS   HKQ+C   N WT
Sbjct: 49  SSSSVSQPYRESSTSGHKQVCTTRNGWT 76


>At4g39280.1 68417.m05563 phenylalanyl-tRNA synthetase, putative /
           phenylalanine--tRNA ligase, putative similar to
           SP|Q9Y285 Phenylalanyl-tRNA synthetase alpha chain (EC
           6.1.1.20) (Phenylalanine- -tRNA ligase alpha chain)
           (PheRS) {Homo sapiens}; contains Pfam profile PF01409:
           tRNA synthetases class II core domain (F)
          Length = 485

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 630 IANVALVDIPQPSFLP*YEHTVREVVQIEAASPTVLAELDQVEGL 496
           +++  L  + Q  F+P    ++  V + EA   T LAE  Q+EGL
Sbjct: 320 VSSRMLYALAQKPFVPKKYFSIDRVFRNEAVDRTHLAEFHQIEGL 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,654,241
Number of Sequences: 28952
Number of extensions: 403701
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)