Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00182
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    29   4.3  
At1g74210.1 68414.m08595 glycerophosphoryl diester phosphodieste...    28   5.6  
At5g58280.1 68418.m07296 transcriptional factor B3 family protei...    28   7.4  
At3g17890.1 68416.m02279 expressed protein                             28   7.4  

>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 54  TMSDDGSTVVEKKG-RGRPKANGTQPESKELKK---RGRPPAATRTKDSAKSS 200
           T S     + +K G  GRPK +  +   + L+K     RPPAAT  +D+  SS
Sbjct: 326 TESKTSIQISKKSGSNGRPKYSTLEKAIRNLEKLVAESRPPAATENQDADISS 378


>At1g74210.1 68414.m08595 glycerophosphoryl diester
           phosphodiesterase family protein low similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 392

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 695 TQVRYSYHSSYIIFKCTK*SLKIKSFLKTNLSYMNTL 585
           T  +Y Y  SY+  K  K  L I+SF  T+L Y++ L
Sbjct: 204 TLKKYGYGGSYLSKKWLKKPLFIQSFAPTSLVYISNL 240


>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 273

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 482 LINGFKIKILVNSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF*EMI 625
           +I+ ++  ++V++  +SNL   R S+T++  I  P + CK   + E +
Sbjct: 60  VISSYRDDVVVDTGRTSNLRRSRHSSTWATYISRPLHECKFASYEEKV 107


>At3g17890.1 68416.m02279 expressed protein
          Length = 153

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 114 NGTQPESKELKKRGRPPAATRTKD---SAKSSDDEQAP 218
           NG+QPE+ + K   RP    +TK+   + KS + ++ P
Sbjct: 21  NGSQPEAPKTKAEKRPKRVQKTKEKDLNLKSDEPKRVP 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,768
Number of Sequences: 28952
Number of extensions: 237618
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)