Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00181
         (699 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115039-1|AAI15040.1|  798|Homo sapiens MKL1 protein protein.         32   1.7  
M23618-1|AAA88076.1|   95|Homo sapiens high mobility group prote...    32   2.3  
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator...    31   5.2  
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator...    31   5.2  
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix...    31   5.2  
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.    31   5.2  
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.    31   5.2  
AC006127-2|AAC97987.1|  661|Homo sapiens SN24_HUMAN protein.           31   5.2  
AC006127-1|AAC97986.1|  628|Homo sapiens BRG-1-HUMAN  [AA 812-14...    31   5.2  

>BC115039-1|AAI15040.1|  798|Homo sapiens MKL1 protein protein.
          Length = 798

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 208 SSSEDLAESF-VLVAAGGRPRFLSSFDSGCVPLAFGLPRPFFSTTVEPSSDIV 53
           SSS+ + + F +L+ +GG PR  S F    +P   G   P  S  V P S  +
Sbjct: 743 SSSQQMDDLFDILIQSGGNPRNFSRFQGAAIPAREGEAIPEDSLWVPPGSTAI 795


>M23618-1|AAA88076.1|   95|Homo sapiens high mobility group protein
           protein.
          Length = 95

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 84  EKKGRGRPKANGTQPESKELKKRGR-PPAATRTKDSAKSSDDEQAP 218
           EK+GRGRP+    +P      KR R  P  ++ K +AK+      P
Sbjct: 22  EKRGRGRPRKQPPEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTP 67


>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
            protein.
          Length = 1647

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60   SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
            SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448


>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
            hSNF2b protein.
          Length = 1647

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60   SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
            SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448


>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1647

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60   SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
            SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448


>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
          Length = 1647

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60   SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
            SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448


>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
          Length = 1679

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60   SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
            SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 1449 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1480


>AC006127-2|AAC97987.1|  661|Homo sapiens SN24_HUMAN protein.
          Length = 661

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
           SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 604 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 635


>AC006127-1|AAC97986.1|  628|Homo sapiens BRG-1-HUMAN  [AA 812-1440]
           protein.
          Length = 628

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 60  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 167
           SD GS+      R R K +    ESK+ KKRGRPPA
Sbjct: 571 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 602


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,554,301
Number of Sequences: 237096
Number of extensions: 1594560
Number of successful extensions: 7364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7364
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)