Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00181
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021172-1|CAA15962.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.20
AF056579-1|AAC78601.1| 315|Caenorhabditis elegans high mobility... 33 0.20
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 31 1.0
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.4
Z92775-3|CAB62778.2| 396|Caenorhabditis elegans Hypothetical pr... 28 5.6
AB070577-1|BAC66472.1| 396|Caenorhabditis elegans L-3,4-dihydro... 28 5.6
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 28 7.4
Z46933-6|CAA87038.3| 321|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z46829-2|CAA86863.3| 321|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AL021172-1|CAA15962.1| 315|Caenorhabditis elegans Hypothetical
protein Y17G7A.1 protein.
Length = 315
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 57 MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 221
++D GS+ V KKGRGRP N + L K+GR A + D +PV
Sbjct: 111 VNDTGSSPV-KKGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADTDAIDTASSPV 164
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 63 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 221
D S+ V KKGRGRP N + L K+GR A + D +PV
Sbjct: 158 DTASSPV-KKGRGRPAKNPSADAGSPLVKKGRGRQAKNLAADTDAIDTASSPV 209
>AF056579-1|AAC78601.1| 315|Caenorhabditis elegans high mobility
group protein I beta protein.
Length = 315
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 57 MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 221
++D GS+ V KKGRGRP N + L K+GR A + D +PV
Sbjct: 111 VNDTGSSPV-KKGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADTDAIDTASSPV 164
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 63 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 221
D S+ V KKGRGRP N + L K+GR A + D +PV
Sbjct: 158 DTASSPV-KKGRGRPAKNPSADAGSPLVKKGRGRQAKNLAADTDAIDTASSPV 209
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 87 KKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 212
K+GRGRP++ T +++ + AA R+K + ++EQ
Sbjct: 572 KRGRGRPRSRSTMSITEDSEPSTSSTAAKRSKRAESDEEEEQ 613
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 84 EKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVA 224
+K + + + + E +E+K++ ++ TK +A D+E+ PVA
Sbjct: 190 KKSAKSKDDDSSDEEEEEEVKEKSPKKSSKSTKRAASDDDEEEEPVA 236
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 123 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 224
+P +K + P P A + + S+ SSDDE+ PVA
Sbjct: 321 KPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVA 355
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 123 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 224
+P +K + P P A + + S+ SSDDE+ PVA
Sbjct: 383 KPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVA 417
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 123 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 224
+P +K P P A + + S+ SSDDE+ PVA
Sbjct: 505 KPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVA 539
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 126 PESKELKKRGRPPAATRTKDSAKSSDDEQAPVA 224
P K K P A + + S+ SSDDE+ P A
Sbjct: 292 PAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAA 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 123 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 224
+P +K + P P A + + S+ SSDDE+ P A
Sbjct: 352 KPVAKPAPAKATPKPVAKKAESSSDSSDDEKKPAA 386
>Z92775-3|CAB62778.2| 396|Caenorhabditis elegans Hypothetical
protein C06H5.7 protein.
Length = 396
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 260 FSGTFWSASTSFSYWCLFIIRRLSRIFCSGGSWRPTSFFKFFRLRLC 120
F G+FWSA S+ C + +L + W+P + K+F +R C
Sbjct: 116 FIGSFWSAMVSY---CSLSVLKLFAV------WKPFHYRKWFTMRRC 153
>AB070577-1|BAC66472.1| 396|Caenorhabditis elegans
L-3,4-dihydroxyphenylalanine receptorprotein.
Length = 396
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 260 FSGTFWSASTSFSYWCLFIIRRLSRIFCSGGSWRPTSFFKFFRLRLC 120
F G+FWSA S+ C + +L + W+P + K+F +R C
Sbjct: 116 FIGSFWSAMVSY---CSLSVLKLFAV------WKPFHYRKWFTMRRC 153
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 60 SDDGSTVVEKKGRGRPKANGT-QPESKELKKRGRPPAATRTKDSAKSSDDE 209
SD+ KK +G P G +P S RP A TK SAK + DE
Sbjct: 321 SDEDDVDFGKKKKGAPSTRGRGRPPSSN-----RPTRAAATKRSAKDASDE 366
>Z46933-6|CAA87038.3| 321|Caenorhabditis elegans Hypothetical
protein T14B1.2 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 263 LFSGTFWSASTSFSYWCLFIIRRLSRIFCSGGSWRPTSFFKFFRLRLCSI 114
LFS T W+ T Y L++ C ++ T+ FFRL + I
Sbjct: 217 LFSSTLWTFFTCLPYRLLYLFSIFCGETCQINNYYKTATNLFFRLLIVGI 266
>Z46829-2|CAA86863.3| 321|Caenorhabditis elegans Hypothetical
protein T14B1.2 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 263 LFSGTFWSASTSFSYWCLFIIRRLSRIFCSGGSWRPTSFFKFFRLRLCSI 114
LFS T W+ T Y L++ C ++ T+ FFRL + I
Sbjct: 217 LFSSTLWTFFTCLPYRLLYLFSIFCGETCQINNYYKTATNLFFRLLIVGI 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,979
Number of Sequences: 27780
Number of extensions: 255123
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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