Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00181
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.23 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.30 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 63  DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDE 209
           +D  T +E+ GRG+ + +G          RGR     + KD   ++D E
Sbjct: 69  NDKKTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYE 117


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 232 PRLATGACSSSEDLAESFVLVAAGGRPRFLSSFD 131
           P++ T   S    +A +F+L    G PR +SSFD
Sbjct: 315 PQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFD 348


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 164 WRPTSFFK 141
           WRP SFFK
Sbjct: 119 WRPDSFFK 126


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 517 VNQYFNFETINEKQKFIFTVHILNYH 440
           +  YFN          + TV +LN+H
Sbjct: 325 IGSYFNCIMFMVASSVVLTVLVLNFH 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,483
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)